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Dataset for transcriptome analysis of abscisic acid degrading bacterium Novosphingobium sp. P6W
Plant growth-promoting rhizobacteria (PGPR) improve plant productivity and stress resistance. The mechanisms involved in plant-microbe interactions include the modulation of plant hormone status. The Novosphingobium sp. strain P6W was previously described as the bacterium capable of abscisic acid (A...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6938937/ https://www.ncbi.nlm.nih.gov/pubmed/31909107 http://dx.doi.org/10.1016/j.dib.2019.105001 |
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author | Gogoleva, Natalia E. Konnova, Tatiana A. Ismailov, Timur T. Balkin, Alexander S. Belimov, Andrey A. Gogolev, Yuri V. |
author_facet | Gogoleva, Natalia E. Konnova, Tatiana A. Ismailov, Timur T. Balkin, Alexander S. Belimov, Andrey A. Gogolev, Yuri V. |
author_sort | Gogoleva, Natalia E. |
collection | PubMed |
description | Plant growth-promoting rhizobacteria (PGPR) improve plant productivity and stress resistance. The mechanisms involved in plant-microbe interactions include the modulation of plant hormone status. The Novosphingobium sp. strain P6W was previously described as the bacterium capable of abscisic acid (ABA) degradation, and its inoculation decreased ABA concentrations in planta. The metabolic pathway for the ABA degradation in bacteria is still unknown. Here we present transcriptome data of Novosphingobium sp. P6W grown in the medium supplemented with ABA or fructose as the carbon source. Cleaned FASTQ files for the RNA-seq libraries are deposited in the NCBI Sequence Read Archive (SRA, Identifier: SRP189498) and have been assigned BioProject accession PRJNA529223. |
format | Online Article Text |
id | pubmed-6938937 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-69389372020-01-06 Dataset for transcriptome analysis of abscisic acid degrading bacterium Novosphingobium sp. P6W Gogoleva, Natalia E. Konnova, Tatiana A. Ismailov, Timur T. Balkin, Alexander S. Belimov, Andrey A. Gogolev, Yuri V. Data Brief Biochemistry, Genetics and Molecular Biology Plant growth-promoting rhizobacteria (PGPR) improve plant productivity and stress resistance. The mechanisms involved in plant-microbe interactions include the modulation of plant hormone status. The Novosphingobium sp. strain P6W was previously described as the bacterium capable of abscisic acid (ABA) degradation, and its inoculation decreased ABA concentrations in planta. The metabolic pathway for the ABA degradation in bacteria is still unknown. Here we present transcriptome data of Novosphingobium sp. P6W grown in the medium supplemented with ABA or fructose as the carbon source. Cleaned FASTQ files for the RNA-seq libraries are deposited in the NCBI Sequence Read Archive (SRA, Identifier: SRP189498) and have been assigned BioProject accession PRJNA529223. Elsevier 2019-12-16 /pmc/articles/PMC6938937/ /pubmed/31909107 http://dx.doi.org/10.1016/j.dib.2019.105001 Text en © 2019 The Author(s) http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Biochemistry, Genetics and Molecular Biology Gogoleva, Natalia E. Konnova, Tatiana A. Ismailov, Timur T. Balkin, Alexander S. Belimov, Andrey A. Gogolev, Yuri V. Dataset for transcriptome analysis of abscisic acid degrading bacterium Novosphingobium sp. P6W |
title | Dataset for transcriptome analysis of abscisic acid degrading bacterium Novosphingobium sp. P6W |
title_full | Dataset for transcriptome analysis of abscisic acid degrading bacterium Novosphingobium sp. P6W |
title_fullStr | Dataset for transcriptome analysis of abscisic acid degrading bacterium Novosphingobium sp. P6W |
title_full_unstemmed | Dataset for transcriptome analysis of abscisic acid degrading bacterium Novosphingobium sp. P6W |
title_short | Dataset for transcriptome analysis of abscisic acid degrading bacterium Novosphingobium sp. P6W |
title_sort | dataset for transcriptome analysis of abscisic acid degrading bacterium novosphingobium sp. p6w |
topic | Biochemistry, Genetics and Molecular Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6938937/ https://www.ncbi.nlm.nih.gov/pubmed/31909107 http://dx.doi.org/10.1016/j.dib.2019.105001 |
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