Cargando…

Dataset for transcriptome analysis of abscisic acid degrading bacterium Novosphingobium sp. P6W

Plant growth-promoting rhizobacteria (PGPR) improve plant productivity and stress resistance. The mechanisms involved in plant-microbe interactions include the modulation of plant hormone status. The Novosphingobium sp. strain P6W was previously described as the bacterium capable of abscisic acid (A...

Descripción completa

Detalles Bibliográficos
Autores principales: Gogoleva, Natalia E., Konnova, Tatiana A., Ismailov, Timur T., Balkin, Alexander S., Belimov, Andrey A., Gogolev, Yuri V.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6938937/
https://www.ncbi.nlm.nih.gov/pubmed/31909107
http://dx.doi.org/10.1016/j.dib.2019.105001
_version_ 1783484134012747776
author Gogoleva, Natalia E.
Konnova, Tatiana A.
Ismailov, Timur T.
Balkin, Alexander S.
Belimov, Andrey A.
Gogolev, Yuri V.
author_facet Gogoleva, Natalia E.
Konnova, Tatiana A.
Ismailov, Timur T.
Balkin, Alexander S.
Belimov, Andrey A.
Gogolev, Yuri V.
author_sort Gogoleva, Natalia E.
collection PubMed
description Plant growth-promoting rhizobacteria (PGPR) improve plant productivity and stress resistance. The mechanisms involved in plant-microbe interactions include the modulation of plant hormone status. The Novosphingobium sp. strain P6W was previously described as the bacterium capable of abscisic acid (ABA) degradation, and its inoculation decreased ABA concentrations in planta. The metabolic pathway for the ABA degradation in bacteria is still unknown. Here we present transcriptome data of Novosphingobium sp. P6W grown in the medium supplemented with ABA or fructose as the carbon source. Cleaned FASTQ files for the RNA-seq libraries are deposited in the NCBI Sequence Read Archive (SRA, Identifier: SRP189498) and have been assigned BioProject accession PRJNA529223.
format Online
Article
Text
id pubmed-6938937
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-69389372020-01-06 Dataset for transcriptome analysis of abscisic acid degrading bacterium Novosphingobium sp. P6W Gogoleva, Natalia E. Konnova, Tatiana A. Ismailov, Timur T. Balkin, Alexander S. Belimov, Andrey A. Gogolev, Yuri V. Data Brief Biochemistry, Genetics and Molecular Biology Plant growth-promoting rhizobacteria (PGPR) improve plant productivity and stress resistance. The mechanisms involved in plant-microbe interactions include the modulation of plant hormone status. The Novosphingobium sp. strain P6W was previously described as the bacterium capable of abscisic acid (ABA) degradation, and its inoculation decreased ABA concentrations in planta. The metabolic pathway for the ABA degradation in bacteria is still unknown. Here we present transcriptome data of Novosphingobium sp. P6W grown in the medium supplemented with ABA or fructose as the carbon source. Cleaned FASTQ files for the RNA-seq libraries are deposited in the NCBI Sequence Read Archive (SRA, Identifier: SRP189498) and have been assigned BioProject accession PRJNA529223. Elsevier 2019-12-16 /pmc/articles/PMC6938937/ /pubmed/31909107 http://dx.doi.org/10.1016/j.dib.2019.105001 Text en © 2019 The Author(s) http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Biochemistry, Genetics and Molecular Biology
Gogoleva, Natalia E.
Konnova, Tatiana A.
Ismailov, Timur T.
Balkin, Alexander S.
Belimov, Andrey A.
Gogolev, Yuri V.
Dataset for transcriptome analysis of abscisic acid degrading bacterium Novosphingobium sp. P6W
title Dataset for transcriptome analysis of abscisic acid degrading bacterium Novosphingobium sp. P6W
title_full Dataset for transcriptome analysis of abscisic acid degrading bacterium Novosphingobium sp. P6W
title_fullStr Dataset for transcriptome analysis of abscisic acid degrading bacterium Novosphingobium sp. P6W
title_full_unstemmed Dataset for transcriptome analysis of abscisic acid degrading bacterium Novosphingobium sp. P6W
title_short Dataset for transcriptome analysis of abscisic acid degrading bacterium Novosphingobium sp. P6W
title_sort dataset for transcriptome analysis of abscisic acid degrading bacterium novosphingobium sp. p6w
topic Biochemistry, Genetics and Molecular Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6938937/
https://www.ncbi.nlm.nih.gov/pubmed/31909107
http://dx.doi.org/10.1016/j.dib.2019.105001
work_keys_str_mv AT gogolevanataliae datasetfortranscriptomeanalysisofabscisicaciddegradingbacteriumnovosphingobiumspp6w
AT konnovatatianaa datasetfortranscriptomeanalysisofabscisicaciddegradingbacteriumnovosphingobiumspp6w
AT ismailovtimurt datasetfortranscriptomeanalysisofabscisicaciddegradingbacteriumnovosphingobiumspp6w
AT balkinalexanders datasetfortranscriptomeanalysisofabscisicaciddegradingbacteriumnovosphingobiumspp6w
AT belimovandreya datasetfortranscriptomeanalysisofabscisicaciddegradingbacteriumnovosphingobiumspp6w
AT gogolevyuriv datasetfortranscriptomeanalysisofabscisicaciddegradingbacteriumnovosphingobiumspp6w