GenePiper, a Graphical User Interface Tool for Microbiome Sequence Data Mining

Amplicon sequencing of the 16S rRNA gene is commonly performed for the assessment and comparison of microbiomes. Here, we introduce GenePiper, an open-source R Shiny application that provides an easy-to-use interface, a wide range of analytical methods, and optimized graphical outputs for offline mi...

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Detalles Bibliográficos
Autores principales: Tong, W. M., Chan, Yuki
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2020
Materias:
Databases and Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6940285/
https://www.ncbi.nlm.nih.gov/pubmed/31896633
http://dx.doi.org/10.1128/MRA.01195-19
Descripción
Sumario:Amplicon sequencing of the 16S rRNA gene is commonly performed for the assessment and comparison of microbiomes. Here, we introduce GenePiper, an open-source R Shiny application that provides an easy-to-use interface, a wide range of analytical methods, and optimized graphical outputs for offline microbiome data analyses.

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