GenePiper, a Graphical User Interface Tool for Microbiome Sequence Data Mining

Amplicon sequencing of the 16S rRNA gene is commonly performed for the assessment and comparison of microbiomes. Here, we introduce GenePiper, an open-source R Shiny application that provides an easy-to-use interface, a wide range of analytical methods, and optimized graphical outputs for offline mi...

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Detalles Bibliográficos
Autores principales: Tong, W. M., Chan, Yuki
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2020
Materias:
Databases and Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6940285/
https://www.ncbi.nlm.nih.gov/pubmed/31896633
http://dx.doi.org/10.1128/MRA.01195-19
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author Tong, W. M.
Chan, Yuki
author_facet Tong, W. M.
Chan, Yuki
author_sort Tong, W. M.
collection PubMed
description Amplicon sequencing of the 16S rRNA gene is commonly performed for the assessment and comparison of microbiomes. Here, we introduce GenePiper, an open-source R Shiny application that provides an easy-to-use interface, a wide range of analytical methods, and optimized graphical outputs for offline microbiome data analyses.
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spelling pubmed-69402852020-01-09 GenePiper, a Graphical User Interface Tool for Microbiome Sequence Data Mining Tong, W. M. Chan, Yuki Microbiol Resour Announc Databases and Software Amplicon sequencing of the 16S rRNA gene is commonly performed for the assessment and comparison of microbiomes. Here, we introduce GenePiper, an open-source R Shiny application that provides an easy-to-use interface, a wide range of analytical methods, and optimized graphical outputs for offline microbiome data analyses. American Society for Microbiology 2020-01-02 /pmc/articles/PMC6940285/ /pubmed/31896633 http://dx.doi.org/10.1128/MRA.01195-19 Text en Copyright © 2020 Tong and Chan. https://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Databases and Software
Tong, W. M.
Chan, Yuki
GenePiper, a Graphical User Interface Tool for Microbiome Sequence Data Mining
title GenePiper, a Graphical User Interface Tool for Microbiome Sequence Data Mining
title_full GenePiper, a Graphical User Interface Tool for Microbiome Sequence Data Mining
title_fullStr GenePiper, a Graphical User Interface Tool for Microbiome Sequence Data Mining
title_full_unstemmed GenePiper, a Graphical User Interface Tool for Microbiome Sequence Data Mining
title_short GenePiper, a Graphical User Interface Tool for Microbiome Sequence Data Mining
title_sort genepiper, a graphical user interface tool for microbiome sequence data mining
topic Databases and Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6940285/
https://www.ncbi.nlm.nih.gov/pubmed/31896633
http://dx.doi.org/10.1128/MRA.01195-19
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