Cargando…

Measuring local-directional resolution and local anisotropy in cryo-EM maps

The introduction of local resolution has enormously helped the understanding of cryo-EM maps. Still, for any given pixel it is a global, aggregated value, that makes impossible the individual analysis of the contribution of the different projection directions. We introduce MonoDir, a fully automatic...

Descripción completa

Detalles Bibliográficos
Autores principales:	Vilas, Jose Luis, Tagare, Hemant D., Vargas, Javier, Carazo, Jose Maria, Sorzano, Carlos Oscar S.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2020
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6940361/ https://www.ncbi.nlm.nih.gov/pubmed/31896756 http://dx.doi.org/10.1038/s41467-019-13742-w

Ejemplares similares

Automatic local resolution-based sharpening of cryo-EM maps
por: Ramírez-Aportela, Erney, et al.
Publicado: (2019)

The Local Resolution of Cryo-EM Density Maps
por: Kucukelbir, Alp, et al.
Publicado: (2013)

Emerging Themes in CryoEM—Single Particle Analysis Image Processing
por: Vilas, Jose Luis, et al.
Publicado: (2022)

Principal component analysis is limited to low-resolution analysis in cryoEM
por: Sorzano, Carlos Oscar S., et al.
Publicado: (2021)

Higher resolution in cryo-EM by the combination of macromolecular prior knowledge and image-processing tools
por: Ramírez-Aportela, Erney, et al.
Publicado: (2022)

FSC-Q: a CryoEM map-to-atomic model quality validation based on the local Fourier shell correlation
por: Ramírez-Aportela, Erney, et al.
Publicado: (2021)

DeepEMhancer: a deep learning solution for cryo-EM volume post-processing
por: Sanchez-Garcia, Ruben, et al.
Publicado: (2021)

DeepRes: a new deep-learning- and aspect-based local resolution method for electron-microscopy maps
por: Ramírez-Aportela, Erney, et al.
Publicado: (2019)

Protein dynamics developments for the large scale and cryoEM: case study of ProDy 2.0
por: Krieger, James Michael, et al.
Publicado: (2022)

State-dependent sequential allostery exhibited by chaperonin TRiC/CCT revealed by network analysis of Cryo-EM maps
por: Zhang, Yan, et al.
Publicado: (2020)

Local computational methods to improve the interpretability and analysis of cryo-EM maps
por: Kaur, Satinder, et al.
Publicado: (2021)

Fast multiscale reconstruction for Cryo-EM()
por: Donati, Laurène, et al.
Publicado: (2018)

Scipion-EM-ProDy: A Graphical Interface for the ProDy Python Package within the Scipion Workflow Engine Enabling Integration of Databases, Simulations and Cryo-Electron Microscopy Image Processing
por: Krieger, James M., et al.
Publicado: (2023)

Improvement of cryo-EM maps by simultaneous local and non-local deep learning
por: He, Jiahua, et al.
Publicado: (2023)

Model-based local density sharpening of cryo-EM maps
por: Jakobi, Arjen J, et al.
Publicado: (2017)

VESPER: global and local cryo-EM map alignment using local density vectors
por: Han, Xusi, et al.
Publicado: (2021)

Measurement of local resolution in electron tomography
por: Vilas, J.L., et al.
Publicado: (2019)

A robust normalized local filter to estimate compositional heterogeneity directly from cryo-EM maps
por: Forsberg, Björn O., et al.
Publicado: (2023)

Cryo-EM structure of the plant 26S proteasome
por: Kandolf, Susanne, et al.
Publicado: (2022)

AlphaFold2 and CryoEM: Revisiting CryoEM modeling in near-atomic resolution density maps
por: Hryc, Corey F., et al.
Publicado: (2022)

Real space in cryo-EM: the future is local
por: Palmer, Colin M., et al.
Publicado: (2022)

Local heterogeneity analysis of crystallographic and cryo-EM maps using shell-approximation
por: Lunin, Vladimir Y., et al.
Publicado: (2023)

Deep Consensus, a deep learning-based approach for particle pruning in cryo-electron microscopy
por: Sanchez-Garcia, Ruben, et al.
Publicado: (2018)

Cryo-EM and the elucidation of new macromolecular structures: Random Conical Tilt revisited
por: Sorzano, C. O. S., et al.
Publicado: (2015)

Interpreting the cryo-EM map
por: Rosenthal, Peter B.
Publicado: (2019)

Interpretation of medium resolution cryoEM maps of multi-protein complexes
por: Casañal, Ana, et al.
Publicado: (2019)

Asymmetric cryo-EM reconstruction of phage MS2 reveals genome structure in situ
por: Koning, Roman I, et al.
Publicado: (2016)

Estimating conformational landscapes from Cryo-EM particles by 3D Zernike polynomials
por: Herreros, D., et al.
Publicado: (2023)

Using Scipion for stream image processing at Cryo-EM facilities
por: Gómez-Blanco, J., et al.
Publicado: (2018)

Density modification of cryo-EM maps
por: Terwilliger, Thomas C., et al.
Publicado: (2020)

XTEND: Extending the depth of field in cryo soft X-ray tomography
por: Otón, Joaquín, et al.
Publicado: (2017)

The cryo-EM resolution revolution and transcription complexes
por: Hanske, Jonas, et al.
Publicado: (2018)

Single-particle cryo-EM: beyond the resolution
por: Armache, Jean-Paul, et al.
Publicado: (2019)

Scipion Flexibility Hub: an integrative framework for advanced analysis of conformational heterogeneity in cryoEM
por: Herreros, D., et al.
Publicado: (2023)

Tools for the cryo-EM gold rush: going from the cryo-EM map to the atomistic model
por: Kim, Doo Nam, et al.
Publicado: (2017)

Multi-Scale Flexible Fitting of Proteins to Cryo-EM Density Maps at Medium Resolution
por: Kulik, Marta, et al.
Publicado: (2021)

Confidence maps: statistical inference of cryo-EM maps
por: Beckers, Maximilian, et al.
Publicado: (2020)

Direct IgG epitope mapping on bacterial AB toxins by cryo-EM
por: Nguyen, Tri, et al.
Publicado: (2021)

Improvement of cryo-EM maps by density modification
por: Terwilliger, Thomas C., et al.
Publicado: (2020)

De novo protein structure determination from near-atomic resolution cryo-EM maps
por: Wang, Ray Yu-Ruei, et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_q1tbl24ad2rkpnk483hca4g5ge