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An Integrated Pan-Cancer Analysis and Structure-Based Virtual Screening of GPR15
G protein-coupled receptor 15 (GPR15, also known as BOB) is an extensively studied orphan G protein-coupled receptors (GPCRs) involving human immunodeficiency virus (HIV) infection, colonic inflammation, and smoking-related diseases. Recently, GPR15 was deorphanized and its corresponding natural lig...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6940937/ https://www.ncbi.nlm.nih.gov/pubmed/31835584 http://dx.doi.org/10.3390/ijms20246226 |
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author | Wang, Yanjing Wang, Xiangeng Xiong, Yi Li, Cheng-Dong Xu, Qin Shen, Lu Chandra Kaushik, Aman Wei, Dong-Qing |
author_facet | Wang, Yanjing Wang, Xiangeng Xiong, Yi Li, Cheng-Dong Xu, Qin Shen, Lu Chandra Kaushik, Aman Wei, Dong-Qing |
author_sort | Wang, Yanjing |
collection | PubMed |
description | G protein-coupled receptor 15 (GPR15, also known as BOB) is an extensively studied orphan G protein-coupled receptors (GPCRs) involving human immunodeficiency virus (HIV) infection, colonic inflammation, and smoking-related diseases. Recently, GPR15 was deorphanized and its corresponding natural ligand demonstrated an ability to inhibit cancer cell growth. However, no study reported the potential role of GPR15 in a pan-cancer manner. Using large-scale publicly available data from the Cancer Genome Atlas (TCGA) and the Genotype-Tissue Expression (GTEx) databases, we found that GPR15 expression is significantly lower in colon adenocarcinoma (COAD) and rectal adenocarcinoma (READ) than in normal tissues. Among 33 cancer types, GPR15 expression was significantly positively correlated with the prognoses of COAD, neck squamous carcinoma (HNSC), and lung adenocarcinoma (LUAD) and significantly negatively correlated with stomach adenocarcinoma (STAD). This study also revealed that commonly upregulated gene sets in the high GPR15 expression group (stratified via median) of COAD, HNSC, LUAD, and STAD are enriched in immune systems, indicating that GPR15 might be considered as a potential target for cancer immunotherapy. Furthermore, we modelled the 3D structure of GPR15 and conducted structure-based virtual screening. The top eight hit compounds were screened and then subjected to molecular dynamics (MD) simulation for stability analysis. Our study provides novel insights into the role of GPR15 in a pan-cancer manner and discovered a potential hit compound for GPR15 antagonists. |
format | Online Article Text |
id | pubmed-6940937 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-69409372020-01-09 An Integrated Pan-Cancer Analysis and Structure-Based Virtual Screening of GPR15 Wang, Yanjing Wang, Xiangeng Xiong, Yi Li, Cheng-Dong Xu, Qin Shen, Lu Chandra Kaushik, Aman Wei, Dong-Qing Int J Mol Sci Article G protein-coupled receptor 15 (GPR15, also known as BOB) is an extensively studied orphan G protein-coupled receptors (GPCRs) involving human immunodeficiency virus (HIV) infection, colonic inflammation, and smoking-related diseases. Recently, GPR15 was deorphanized and its corresponding natural ligand demonstrated an ability to inhibit cancer cell growth. However, no study reported the potential role of GPR15 in a pan-cancer manner. Using large-scale publicly available data from the Cancer Genome Atlas (TCGA) and the Genotype-Tissue Expression (GTEx) databases, we found that GPR15 expression is significantly lower in colon adenocarcinoma (COAD) and rectal adenocarcinoma (READ) than in normal tissues. Among 33 cancer types, GPR15 expression was significantly positively correlated with the prognoses of COAD, neck squamous carcinoma (HNSC), and lung adenocarcinoma (LUAD) and significantly negatively correlated with stomach adenocarcinoma (STAD). This study also revealed that commonly upregulated gene sets in the high GPR15 expression group (stratified via median) of COAD, HNSC, LUAD, and STAD are enriched in immune systems, indicating that GPR15 might be considered as a potential target for cancer immunotherapy. Furthermore, we modelled the 3D structure of GPR15 and conducted structure-based virtual screening. The top eight hit compounds were screened and then subjected to molecular dynamics (MD) simulation for stability analysis. Our study provides novel insights into the role of GPR15 in a pan-cancer manner and discovered a potential hit compound for GPR15 antagonists. MDPI 2019-12-10 /pmc/articles/PMC6940937/ /pubmed/31835584 http://dx.doi.org/10.3390/ijms20246226 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Wang, Yanjing Wang, Xiangeng Xiong, Yi Li, Cheng-Dong Xu, Qin Shen, Lu Chandra Kaushik, Aman Wei, Dong-Qing An Integrated Pan-Cancer Analysis and Structure-Based Virtual Screening of GPR15 |
title | An Integrated Pan-Cancer Analysis and Structure-Based Virtual Screening of GPR15 |
title_full | An Integrated Pan-Cancer Analysis and Structure-Based Virtual Screening of GPR15 |
title_fullStr | An Integrated Pan-Cancer Analysis and Structure-Based Virtual Screening of GPR15 |
title_full_unstemmed | An Integrated Pan-Cancer Analysis and Structure-Based Virtual Screening of GPR15 |
title_short | An Integrated Pan-Cancer Analysis and Structure-Based Virtual Screening of GPR15 |
title_sort | integrated pan-cancer analysis and structure-based virtual screening of gpr15 |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6940937/ https://www.ncbi.nlm.nih.gov/pubmed/31835584 http://dx.doi.org/10.3390/ijms20246226 |
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