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A simple method for detecting chaos in nature
Chaos, or exponential sensitivity to small perturbations, appears everywhere in nature. Moreover, chaos is predicted to play diverse functional roles in living systems. A method for detecting chaos from empirical measurements should therefore be a key component of the biologist’s toolkit. But, class...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6941982/ https://www.ncbi.nlm.nih.gov/pubmed/31909203 http://dx.doi.org/10.1038/s42003-019-0715-9 |
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author | Toker, Daniel Sommer, Friedrich T. D’Esposito, Mark |
author_facet | Toker, Daniel Sommer, Friedrich T. D’Esposito, Mark |
author_sort | Toker, Daniel |
collection | PubMed |
description | Chaos, or exponential sensitivity to small perturbations, appears everywhere in nature. Moreover, chaos is predicted to play diverse functional roles in living systems. A method for detecting chaos from empirical measurements should therefore be a key component of the biologist’s toolkit. But, classic chaos-detection tools are highly sensitive to measurement noise and break down for common edge cases, making it difficult to detect chaos in domains, like biology, where measurements are noisy. However, newer tools promise to overcome these limitations. Here, we combine several such tools into an automated processing pipeline, and show that our pipeline can detect the presence (or absence) of chaos in noisy recordings, even for difficult edge cases. As a first-pass application of our pipeline, we show that heart rate variability is not chaotic as some have proposed, and instead reflects a stochastic process in both health and disease. Our tool is easy-to-use and freely available. |
format | Online Article Text |
id | pubmed-6941982 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-69419822020-01-06 A simple method for detecting chaos in nature Toker, Daniel Sommer, Friedrich T. D’Esposito, Mark Commun Biol Article Chaos, or exponential sensitivity to small perturbations, appears everywhere in nature. Moreover, chaos is predicted to play diverse functional roles in living systems. A method for detecting chaos from empirical measurements should therefore be a key component of the biologist’s toolkit. But, classic chaos-detection tools are highly sensitive to measurement noise and break down for common edge cases, making it difficult to detect chaos in domains, like biology, where measurements are noisy. However, newer tools promise to overcome these limitations. Here, we combine several such tools into an automated processing pipeline, and show that our pipeline can detect the presence (or absence) of chaos in noisy recordings, even for difficult edge cases. As a first-pass application of our pipeline, we show that heart rate variability is not chaotic as some have proposed, and instead reflects a stochastic process in both health and disease. Our tool is easy-to-use and freely available. Nature Publishing Group UK 2020-01-03 /pmc/articles/PMC6941982/ /pubmed/31909203 http://dx.doi.org/10.1038/s42003-019-0715-9 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Toker, Daniel Sommer, Friedrich T. D’Esposito, Mark A simple method for detecting chaos in nature |
title | A simple method for detecting chaos in nature |
title_full | A simple method for detecting chaos in nature |
title_fullStr | A simple method for detecting chaos in nature |
title_full_unstemmed | A simple method for detecting chaos in nature |
title_short | A simple method for detecting chaos in nature |
title_sort | simple method for detecting chaos in nature |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6941982/ https://www.ncbi.nlm.nih.gov/pubmed/31909203 http://dx.doi.org/10.1038/s42003-019-0715-9 |
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