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Thera-SAbDab: the Therapeutic Structural Antibody Database

The Therapeutic Structural Antibody Database (Thera-SAbDab; http://opig.stats.ox.ac.uk/webapps/therasabdab) tracks all antibody- and nanobody-related therapeutics recognized by the World Health Organisation (WHO), and identifies any corresponding structures in the Structural Antibody Database (SAbDa...

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Autores principales: Raybould, Matthew I J, Marks, Claire, Lewis, Alan P, Shi, Jiye, Bujotzek, Alexander, Taddese, Bruck, Deane, Charlotte M
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6943036/
https://www.ncbi.nlm.nih.gov/pubmed/31555805
http://dx.doi.org/10.1093/nar/gkz827
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author Raybould, Matthew I J
Marks, Claire
Lewis, Alan P
Shi, Jiye
Bujotzek, Alexander
Taddese, Bruck
Deane, Charlotte M
author_facet Raybould, Matthew I J
Marks, Claire
Lewis, Alan P
Shi, Jiye
Bujotzek, Alexander
Taddese, Bruck
Deane, Charlotte M
author_sort Raybould, Matthew I J
collection PubMed
description The Therapeutic Structural Antibody Database (Thera-SAbDab; http://opig.stats.ox.ac.uk/webapps/therasabdab) tracks all antibody- and nanobody-related therapeutics recognized by the World Health Organisation (WHO), and identifies any corresponding structures in the Structural Antibody Database (SAbDab) with near-exact or exact variable domain sequence matches. Thera-SAbDab is synchronized with SAbDab to update weekly, reflecting new Protein Data Bank entries and the availability of new sequence data published by the WHO. Each therapeutic summary page lists structural coverage (with links to the appropriate SAbDab entries), alignments showing where any near-matches deviate in sequence, and accompanying metadata, such as intended target and investigated conditions. Thera-SAbDab can be queried by therapeutic name, by a combination of metadata, or by variable domain sequence - returning all therapeutics that are within a specified sequence identity over a specified region of the query. The sequences of all therapeutics listed in Thera-SAbDab (461 unique molecules, as of 5 August 2019) are downloadable as a single file with accompanying metadata.
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spelling pubmed-69430362020-01-08 Thera-SAbDab: the Therapeutic Structural Antibody Database Raybould, Matthew I J Marks, Claire Lewis, Alan P Shi, Jiye Bujotzek, Alexander Taddese, Bruck Deane, Charlotte M Nucleic Acids Res Database Issue The Therapeutic Structural Antibody Database (Thera-SAbDab; http://opig.stats.ox.ac.uk/webapps/therasabdab) tracks all antibody- and nanobody-related therapeutics recognized by the World Health Organisation (WHO), and identifies any corresponding structures in the Structural Antibody Database (SAbDab) with near-exact or exact variable domain sequence matches. Thera-SAbDab is synchronized with SAbDab to update weekly, reflecting new Protein Data Bank entries and the availability of new sequence data published by the WHO. Each therapeutic summary page lists structural coverage (with links to the appropriate SAbDab entries), alignments showing where any near-matches deviate in sequence, and accompanying metadata, such as intended target and investigated conditions. Thera-SAbDab can be queried by therapeutic name, by a combination of metadata, or by variable domain sequence - returning all therapeutics that are within a specified sequence identity over a specified region of the query. The sequences of all therapeutics listed in Thera-SAbDab (461 unique molecules, as of 5 August 2019) are downloadable as a single file with accompanying metadata. Oxford University Press 2020-01-08 2019-09-26 /pmc/articles/PMC6943036/ /pubmed/31555805 http://dx.doi.org/10.1093/nar/gkz827 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Raybould, Matthew I J
Marks, Claire
Lewis, Alan P
Shi, Jiye
Bujotzek, Alexander
Taddese, Bruck
Deane, Charlotte M
Thera-SAbDab: the Therapeutic Structural Antibody Database
title Thera-SAbDab: the Therapeutic Structural Antibody Database
title_full Thera-SAbDab: the Therapeutic Structural Antibody Database
title_fullStr Thera-SAbDab: the Therapeutic Structural Antibody Database
title_full_unstemmed Thera-SAbDab: the Therapeutic Structural Antibody Database
title_short Thera-SAbDab: the Therapeutic Structural Antibody Database
title_sort thera-sabdab: the therapeutic structural antibody database
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6943036/
https://www.ncbi.nlm.nih.gov/pubmed/31555805
http://dx.doi.org/10.1093/nar/gkz827
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