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PhaSepDB: a database of liquid–liquid phase separation related proteins

It's widely appreciated that liquid–liquid phase separation (LLPS) underlies the formation of membraneless organelles, which function to concentrate proteins and nucleic acids. In the past few decades, major efforts have been devoted to identify the phase separation associated proteins and eluc...

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Autores principales: You, Kaiqiang, Huang, Qi, Yu, Chunyu, Shen, Boyan, Sevilla, Cristoffer, Shi, Minglei, Hermjakob, Henning, Chen, Yang, Li, Tingting
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6943039/
https://www.ncbi.nlm.nih.gov/pubmed/31584089
http://dx.doi.org/10.1093/nar/gkz847
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author You, Kaiqiang
Huang, Qi
Yu, Chunyu
Shen, Boyan
Sevilla, Cristoffer
Shi, Minglei
Hermjakob, Henning
Chen, Yang
Li, Tingting
author_facet You, Kaiqiang
Huang, Qi
Yu, Chunyu
Shen, Boyan
Sevilla, Cristoffer
Shi, Minglei
Hermjakob, Henning
Chen, Yang
Li, Tingting
author_sort You, Kaiqiang
collection PubMed
description It's widely appreciated that liquid–liquid phase separation (LLPS) underlies the formation of membraneless organelles, which function to concentrate proteins and nucleic acids. In the past few decades, major efforts have been devoted to identify the phase separation associated proteins and elucidate their functions. To better utilize the knowledge dispersed in published literature, we developed PhaSepDB (http://db.phasep.pro/), a manually curated database of phase separation associated proteins. Currently, PhaSepDB includes 2914 non-redundant proteins localized in different organelles curated from published literature and database. PhaSepDB provides protein summary, publication reference and sequence features of phase separation associated proteins. The sequence features which reflect the LLPS behavior are also available for other human protein candidates. The online database provides a convenient interface for the research community to easily browse, search and download phase separation associated proteins. As a centralized resource, we believe PhaSepDB will facilitate the future study of phase separation.
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spelling pubmed-69430392020-01-08 PhaSepDB: a database of liquid–liquid phase separation related proteins You, Kaiqiang Huang, Qi Yu, Chunyu Shen, Boyan Sevilla, Cristoffer Shi, Minglei Hermjakob, Henning Chen, Yang Li, Tingting Nucleic Acids Res Database Issue It's widely appreciated that liquid–liquid phase separation (LLPS) underlies the formation of membraneless organelles, which function to concentrate proteins and nucleic acids. In the past few decades, major efforts have been devoted to identify the phase separation associated proteins and elucidate their functions. To better utilize the knowledge dispersed in published literature, we developed PhaSepDB (http://db.phasep.pro/), a manually curated database of phase separation associated proteins. Currently, PhaSepDB includes 2914 non-redundant proteins localized in different organelles curated from published literature and database. PhaSepDB provides protein summary, publication reference and sequence features of phase separation associated proteins. The sequence features which reflect the LLPS behavior are also available for other human protein candidates. The online database provides a convenient interface for the research community to easily browse, search and download phase separation associated proteins. As a centralized resource, we believe PhaSepDB will facilitate the future study of phase separation. Oxford University Press 2020-01-08 2019-10-04 /pmc/articles/PMC6943039/ /pubmed/31584089 http://dx.doi.org/10.1093/nar/gkz847 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Database Issue
You, Kaiqiang
Huang, Qi
Yu, Chunyu
Shen, Boyan
Sevilla, Cristoffer
Shi, Minglei
Hermjakob, Henning
Chen, Yang
Li, Tingting
PhaSepDB: a database of liquid–liquid phase separation related proteins
title PhaSepDB: a database of liquid–liquid phase separation related proteins
title_full PhaSepDB: a database of liquid–liquid phase separation related proteins
title_fullStr PhaSepDB: a database of liquid–liquid phase separation related proteins
title_full_unstemmed PhaSepDB: a database of liquid–liquid phase separation related proteins
title_short PhaSepDB: a database of liquid–liquid phase separation related proteins
title_sort phasepdb: a database of liquid–liquid phase separation related proteins
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6943039/
https://www.ncbi.nlm.nih.gov/pubmed/31584089
http://dx.doi.org/10.1093/nar/gkz847
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