Cargando…

APAatlas: decoding alternative polyadenylation across human tissues

Alternative polyadenylation (APA) is an RNA-processing mechanism on the 3′ terminus that generates distinct isoforms of mRNAs and/or other RNA polymerase II transcripts with different 3′UTR lengths. Widespread APA affects post-transcriptional gene regulation in mRNA translation, stability, and local...

Descripción completa

Detalles Bibliográficos
Autores principales:	Hong, Wei, Ruan, Hang, Zhang, Zhao, Ye, Youqiong, Liu, Yaoming, Li, Shengli, Jing, Ying, Zhang, Huiwen, Diao, Lixia, Liang, Han, Han, Leng
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2020
Materias:	Database Issue
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6943053/ https://www.ncbi.nlm.nih.gov/pubmed/31586392 http://dx.doi.org/10.1093/nar/gkz876

Ejemplares similares

scAPAatlas: an atlas of alternative polyadenylation across cell types in human and mouse
por: Yang, Xiaoxiao, et al.
Publicado: (2021)

HeRA: an atlas of enhancer RNAs across human tissues
por: Zhang, Zhao, et al.
Publicado: (2020)

GPEdit: the genetic and pharmacogenomic landscape of A-to-I RNA editing in cancers
por: Ruan, Hang, et al.
Publicado: (2021)

3′aQTL-atlas: an atlas of 3′UTR alternative polyadenylation quantitative trait loci across human normal tissues
por: Cui, Ya, et al.
Publicado: (2021)

ipaQTL-atlas: an atlas of intronic polyadenylation quantitative trait loci across human tissues
por: Ma, Xuelian, et al.
Publicado: (2022)

Animal-APAdb: a comprehensive animal alternative polyadenylation database
por: Jin, Weiwei, et al.
Publicado: (2020)

PancanQTL: systematic identification of cis-eQTLs and trans-eQTLs in 33 cancer types
por: Gong, Jing, et al.
Publicado: (2018)

Pancan-meQTL: a database to systematically evaluate the effects of genetic variants on methylation in human cancer
por: Gong, Jing, et al.
Publicado: (2019)

TREND-DB—a transcriptome-wide atlas of the dynamic landscape of alternative polyadenylation
por: Marini, Federico, et al.
Publicado: (2020)

scAPAdb: a comprehensive database of alternative polyadenylation at single-cell resolution
por: Zhu, Sheng, et al.
Publicado: (2021)

SNP2APA: a database for evaluating effects of genetic variants on alternative polyadenylation in human cancers
por: Yang, Yanbo, et al.
Publicado: (2020)

LNCediting: a database for functional effects of RNA editing in lncRNAs
por: Gong, Jing, et al.
Publicado: (2017)

AltTrans: Transcript pattern variants annotated for both alternative splicing and alternative polyadenylation
por: Le Texier, Vincent, et al.
Publicado: (2006)

OncoBase: a platform for decoding regulatory somatic mutations in human cancers
por: Li, Xianfeng, et al.
Publicado: (2019)

PolyA_DB 3 catalogs cleavage and polyadenylation sites identified by deep sequencing in multiple genomes
por: Wang, Ruijia, et al.
Publicado: (2018)

PolyASite 2.0: a consolidated atlas of polyadenylation sites from 3′ end sequencing
por: Herrmann, Christina J, et al.
Publicado: (2020)

The genetic and pharmacogenomic landscape of snoRNAs in human cancer
por: Liu, Yaoming, et al.
Publicado: (2020)

AutDB: a platform to decode the genetic architecture of autism
por: Pereanu, Wayne, et al.
Publicado: (2018)

TcoFBase: a comprehensive database for decoding the regulatory transcription co-factors in human and mouse
por: Zhang, Yuexin, et al.
Publicado: (2021)

IntroVerse: a comprehensive database of introns across human tissues
por: García-Ruiz, Sonia, et al.
Publicado: (2022)

GRNdb: decoding the gene regulatory networks in diverse human and mouse conditions
por: Fang, Li, et al.
Publicado: (2020)

SCovid: single-cell atlases for exposing molecular characteristics of COVID-19 across 10 human tissues
por: Qi, Changlu, et al.
Publicado: (2021)

m(5)C-Atlas: a comprehensive database for decoding and annotating the 5-methylcytosine (m(5)C) epitranscriptome
por: Ma, Jiongming, et al.
Publicado: (2021)

The TissueNet v.2 database: A quantitative view of protein-protein interactions across human tissues
por: Basha, Omer, et al.
Publicado: (2017)

RMBase: a resource for decoding the landscape of RNA modifications from high-throughput sequencing data
por: Sun, Wen-Ju, et al.
Publicado: (2016)

MERAV: a tool for comparing gene expression across human tissues and cell types
por: Shaul, Yoav D., et al.
Publicado: (2016)

CohesinDB: a comprehensive database for decoding cohesin-related epigenomes, 3D genomes and transcriptomes in human cells
por: Wang, Jiankang, et al.
Publicado: (2022)

Pol3Base: a resource for decoding the interactome, expression, evolution, epitranscriptome and disease variations of Pol III-transcribed ncRNAs
por: Cai, Li, et al.
Publicado: (2021)

QTLbase: an integrative resource for quantitative trait loci across multiple human molecular phenotypes
por: Zheng, Zhanye, et al.
Publicado: (2020)

EnhancerAtlas 2.0: an updated resource with enhancer annotation in 586 tissue/cell types across nine species
por: Gao, Tianshun, et al.
Publicado: (2020)

scEnhancer: a single-cell enhancer resource with annotation across hundreds of tissue/cell types in three species
por: Gao, Tianshun, et al.
Publicado: (2021)

MeDAS: a Metazoan Developmental Alternative Splicing database
por: Li, Zhidan, et al.
Publicado: (2020)

ChIPBase v2.0: decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data
por: Zhou, Ke-Ren, et al.
Publicado: (2017)

TissGDB: tissue-specific gene database in cancer
por: Kim, Pora, et al.
Publicado: (2018)

HGD: an integrated homologous gene database across multiple species
por: Duan, Guangya, et al.
Publicado: (2022)

tsRFun: a comprehensive platform for decoding human tsRNA expression, functions and prognostic value by high-throughput small RNA-Seq and CLIP-Seq data
por: Wang, Jun-Hao, et al.
Publicado: (2021)

ASCancer Atlas: a comprehensive knowledgebase of alternative splicing in human cancers
por: Wu, Song, et al.
Publicado: (2022)

NucMap: a database of genome-wide nucleosome positioning map across species
por: Zhao, Yongbing, et al.
Publicado: (2019)

Genome Variation Map: a worldwide collection of genome variations across multiple species
por: Li, Cuiping, et al.
Publicado: (2020)

MethBank 4.0: an updated database of DNA methylation across a variety of species
por: Zhang, Mochen, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_hfj5g482ovab6h290oiklvpad4