Genus for biomolecules

The ‘Genus for biomolecules’ database (http://genus.fuw.edu.pl) collects information about topological structure and complexity of proteins and RNA chains, which is captured by the genus of a given chain and its subchains. For each biomolecule, this information is shown in the form of a genus trace...

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Autores principales: Rubach, Paweł, Zajac, Sebastian, Jastrzebski, Borys, Sulkowska, Joanna I, Sułkowski, Piotr
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Database Issue
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6943057/
https://www.ncbi.nlm.nih.gov/pubmed/31584078
http://dx.doi.org/10.1093/nar/gkz845
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author Rubach, Paweł
Zajac, Sebastian
Jastrzebski, Borys
Sulkowska, Joanna I
Sułkowski, Piotr
author_facet Rubach, Paweł
Zajac, Sebastian
Jastrzebski, Borys
Sulkowska, Joanna I
Sułkowski, Piotr
author_sort Rubach, Paweł
collection PubMed
description The ‘Genus for biomolecules’ database (http://genus.fuw.edu.pl) collects information about topological structure and complexity of proteins and RNA chains, which is captured by the genus of a given chain and its subchains. For each biomolecule, this information is shown in the form of a genus trace plot, as well as a genus matrix diagram. We assemble such information for all and RNA structures deposited in the Protein Data Bank (PDB). This database presents also various statistics and extensive information about the biological function of the analyzed biomolecules. The database is regularly self-updating, once new structures are deposited in the PDB. Moreover, users can analyze their own structures.
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spelling pubmed-69430572020-01-08 Genus for biomolecules Rubach, Paweł Zajac, Sebastian Jastrzebski, Borys Sulkowska, Joanna I Sułkowski, Piotr Nucleic Acids Res Database Issue The ‘Genus for biomolecules’ database (http://genus.fuw.edu.pl) collects information about topological structure and complexity of proteins and RNA chains, which is captured by the genus of a given chain and its subchains. For each biomolecule, this information is shown in the form of a genus trace plot, as well as a genus matrix diagram. We assemble such information for all and RNA structures deposited in the Protein Data Bank (PDB). This database presents also various statistics and extensive information about the biological function of the analyzed biomolecules. The database is regularly self-updating, once new structures are deposited in the PDB. Moreover, users can analyze their own structures. Oxford University Press 2020-01-08 2019-10-04 /pmc/articles/PMC6943057/ /pubmed/31584078 http://dx.doi.org/10.1093/nar/gkz845 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Rubach, Paweł
Zajac, Sebastian
Jastrzebski, Borys
Sulkowska, Joanna I
Sułkowski, Piotr
Genus for biomolecules
title Genus for biomolecules
title_full Genus for biomolecules
title_fullStr Genus for biomolecules
title_full_unstemmed Genus for biomolecules
title_short Genus for biomolecules
title_sort genus for biomolecules
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6943057/
https://www.ncbi.nlm.nih.gov/pubmed/31584078
http://dx.doi.org/10.1093/nar/gkz845
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