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The European Bioinformatics Institute in 2020: building a global infrastructure of interconnected data resources for the life sciences
Data resources at the European Bioinformatics Institute (EMBL-EBI, https://www.ebi.ac.uk/) archive, organize and provide added-value analysis of research data produced around the world. This year's update for EMBL-EBI focuses on data exchanges among resources, both within the institute and with...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6943058/ https://www.ncbi.nlm.nih.gov/pubmed/31701143 http://dx.doi.org/10.1093/nar/gkz1033 |
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author | Cook, Charles E Stroe, Oana Cochrane, Guy Birney, Ewan Apweiler, Rolf |
author_facet | Cook, Charles E Stroe, Oana Cochrane, Guy Birney, Ewan Apweiler, Rolf |
author_sort | Cook, Charles E |
collection | PubMed |
description | Data resources at the European Bioinformatics Institute (EMBL-EBI, https://www.ebi.ac.uk/) archive, organize and provide added-value analysis of research data produced around the world. This year's update for EMBL-EBI focuses on data exchanges among resources, both within the institute and with a wider global infrastructure. Within EMBL-EBI, data resources exchange data through a rich network of data flows mediated by automated systems. This network ensures that users are served with as much information as possible from any search and any starting point within EMBL-EBI’s websites. EMBL-EBI data resources also exchange data with hundreds of other data resources worldwide and collectively are a key component of a global infrastructure of interconnected life sciences data resources. We also describe the BioImage Archive, a deposition database for raw images derived from primary research that will supply data for future knowledgebases that will add value through curation of primary image data. We also report a new release of the PRIDE database with an improved technical infrastructure, a new API, a new webpage, and improved data exchange with UniProt and Expression Atlas. Training is a core mission of EMBL-EBI and in 2018 our training team served more users, both in-person and through web-based programmes, than ever before. |
format | Online Article Text |
id | pubmed-6943058 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-69430582020-01-08 The European Bioinformatics Institute in 2020: building a global infrastructure of interconnected data resources for the life sciences Cook, Charles E Stroe, Oana Cochrane, Guy Birney, Ewan Apweiler, Rolf Nucleic Acids Res Database Issue Data resources at the European Bioinformatics Institute (EMBL-EBI, https://www.ebi.ac.uk/) archive, organize and provide added-value analysis of research data produced around the world. This year's update for EMBL-EBI focuses on data exchanges among resources, both within the institute and with a wider global infrastructure. Within EMBL-EBI, data resources exchange data through a rich network of data flows mediated by automated systems. This network ensures that users are served with as much information as possible from any search and any starting point within EMBL-EBI’s websites. EMBL-EBI data resources also exchange data with hundreds of other data resources worldwide and collectively are a key component of a global infrastructure of interconnected life sciences data resources. We also describe the BioImage Archive, a deposition database for raw images derived from primary research that will supply data for future knowledgebases that will add value through curation of primary image data. We also report a new release of the PRIDE database with an improved technical infrastructure, a new API, a new webpage, and improved data exchange with UniProt and Expression Atlas. Training is a core mission of EMBL-EBI and in 2018 our training team served more users, both in-person and through web-based programmes, than ever before. Oxford University Press 2020-01-08 2019-11-08 /pmc/articles/PMC6943058/ /pubmed/31701143 http://dx.doi.org/10.1093/nar/gkz1033 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database Issue Cook, Charles E Stroe, Oana Cochrane, Guy Birney, Ewan Apweiler, Rolf The European Bioinformatics Institute in 2020: building a global infrastructure of interconnected data resources for the life sciences |
title | The European Bioinformatics Institute in 2020: building a global infrastructure of interconnected data resources for the life sciences |
title_full | The European Bioinformatics Institute in 2020: building a global infrastructure of interconnected data resources for the life sciences |
title_fullStr | The European Bioinformatics Institute in 2020: building a global infrastructure of interconnected data resources for the life sciences |
title_full_unstemmed | The European Bioinformatics Institute in 2020: building a global infrastructure of interconnected data resources for the life sciences |
title_short | The European Bioinformatics Institute in 2020: building a global infrastructure of interconnected data resources for the life sciences |
title_sort | european bioinformatics institute in 2020: building a global infrastructure of interconnected data resources for the life sciences |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6943058/ https://www.ncbi.nlm.nih.gov/pubmed/31701143 http://dx.doi.org/10.1093/nar/gkz1033 |
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