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The European Bioinformatics Institute in 2020: building a global infrastructure of interconnected data resources for the life sciences

Data resources at the European Bioinformatics Institute (EMBL-EBI, https://www.ebi.ac.uk/) archive, organize and provide added-value analysis of research data produced around the world. This year's update for EMBL-EBI focuses on data exchanges among resources, both within the institute and with...

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Detalles Bibliográficos
Autores principales: Cook, Charles E, Stroe, Oana, Cochrane, Guy, Birney, Ewan, Apweiler, Rolf
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6943058/
https://www.ncbi.nlm.nih.gov/pubmed/31701143
http://dx.doi.org/10.1093/nar/gkz1033
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author Cook, Charles E
Stroe, Oana
Cochrane, Guy
Birney, Ewan
Apweiler, Rolf
author_facet Cook, Charles E
Stroe, Oana
Cochrane, Guy
Birney, Ewan
Apweiler, Rolf
author_sort Cook, Charles E
collection PubMed
description Data resources at the European Bioinformatics Institute (EMBL-EBI, https://www.ebi.ac.uk/) archive, organize and provide added-value analysis of research data produced around the world. This year's update for EMBL-EBI focuses on data exchanges among resources, both within the institute and with a wider global infrastructure. Within EMBL-EBI, data resources exchange data through a rich network of data flows mediated by automated systems. This network ensures that users are served with as much information as possible from any search and any starting point within EMBL-EBI’s websites. EMBL-EBI data resources also exchange data with hundreds of other data resources worldwide and collectively are a key component of a global infrastructure of interconnected life sciences data resources. We also describe the BioImage Archive, a deposition database for raw images derived from primary research that will supply data for future knowledgebases that will add value through curation of primary image data. We also report a new release of the PRIDE database with an improved technical infrastructure, a new API, a new webpage, and improved data exchange with UniProt and Expression Atlas. Training is a core mission of EMBL-EBI and in 2018 our training team served more users, both in-person and through web-based programmes, than ever before.
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spelling pubmed-69430582020-01-08 The European Bioinformatics Institute in 2020: building a global infrastructure of interconnected data resources for the life sciences Cook, Charles E Stroe, Oana Cochrane, Guy Birney, Ewan Apweiler, Rolf Nucleic Acids Res Database Issue Data resources at the European Bioinformatics Institute (EMBL-EBI, https://www.ebi.ac.uk/) archive, organize and provide added-value analysis of research data produced around the world. This year's update for EMBL-EBI focuses on data exchanges among resources, both within the institute and with a wider global infrastructure. Within EMBL-EBI, data resources exchange data through a rich network of data flows mediated by automated systems. This network ensures that users are served with as much information as possible from any search and any starting point within EMBL-EBI’s websites. EMBL-EBI data resources also exchange data with hundreds of other data resources worldwide and collectively are a key component of a global infrastructure of interconnected life sciences data resources. We also describe the BioImage Archive, a deposition database for raw images derived from primary research that will supply data for future knowledgebases that will add value through curation of primary image data. We also report a new release of the PRIDE database with an improved technical infrastructure, a new API, a new webpage, and improved data exchange with UniProt and Expression Atlas. Training is a core mission of EMBL-EBI and in 2018 our training team served more users, both in-person and through web-based programmes, than ever before. Oxford University Press 2020-01-08 2019-11-08 /pmc/articles/PMC6943058/ /pubmed/31701143 http://dx.doi.org/10.1093/nar/gkz1033 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Cook, Charles E
Stroe, Oana
Cochrane, Guy
Birney, Ewan
Apweiler, Rolf
The European Bioinformatics Institute in 2020: building a global infrastructure of interconnected data resources for the life sciences
title The European Bioinformatics Institute in 2020: building a global infrastructure of interconnected data resources for the life sciences
title_full The European Bioinformatics Institute in 2020: building a global infrastructure of interconnected data resources for the life sciences
title_fullStr The European Bioinformatics Institute in 2020: building a global infrastructure of interconnected data resources for the life sciences
title_full_unstemmed The European Bioinformatics Institute in 2020: building a global infrastructure of interconnected data resources for the life sciences
title_short The European Bioinformatics Institute in 2020: building a global infrastructure of interconnected data resources for the life sciences
title_sort european bioinformatics institute in 2020: building a global infrastructure of interconnected data resources for the life sciences
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6943058/
https://www.ncbi.nlm.nih.gov/pubmed/31701143
http://dx.doi.org/10.1093/nar/gkz1033
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