Cargando…

OGRDB: a reference database of inferred immune receptor genes

High-throughput sequencing of the adaptive immune receptor repertoire (AIRR-seq) is providing unprecedented insights into the immune response to disease and into the development of immune disorders. The accurate interpretation of AIRR-seq data depends on the existence of comprehensive germline gene...

Descripción completa

Detalles Bibliográficos
Autores principales:	Lees, William, Busse, Christian E, Corcoran, Martin, Ohlin, Mats, Scheepers, Cathrine, Matsen, Frederick A, Yaari, Gur, Watson, Corey T, Collins, Andrew, Shepherd, Adrian J
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2020
Materias:	Database Issue
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6943078/ https://www.ncbi.nlm.nih.gov/pubmed/31566225 http://dx.doi.org/10.1093/nar/gkz822

Ejemplares similares

VDJbase: an adaptive immune receptor genotype and haplotype database
por: Omer, Aviv, et al.
Publicado: (2020)

Commentary on Population matched (pm) germline allelic variants of immunoglobulin (IG) loci: relevance in infectious diseases and vaccination studies in human populations
por: Collins, Andrew M., et al.
Publicado: (2021)

Inferred Allelic Variants of Immunoglobulin Receptor Genes: A System for Their Evaluation, Documentation, and Naming
por: Ohlin, Mats, et al.
Publicado: (2019)

A BALB/c IGHV Reference Set, Defined by Haplotype Analysis of Long-Read VDJ-C Sequences From F1 (BALB/c x C57BL/6) Mice
por: Jackson, Katherine J. L., et al.
Publicado: (2022)

HieranoiDB: a database of orthologs inferred by Hieranoid
por: Kaduk, Mateusz, et al.
Publicado: (2017)

The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics
por: Cooper, Laurel, et al.
Publicado: (2018)

Bovine Genome Database: new annotation tools for a new reference genome
por: Shamimuzzaman, Md, et al.
Publicado: (2020)

Genome properties in 2019: a new companion database to InterPro for the inference of complete functional attributes
por: Richardson, Lorna J, et al.
Publicado: (2019)

HPMCD: the database of human microbial communities from metagenomic datasets and microbial reference genomes
por: Forster, Samuel C., et al.
Publicado: (2016)

TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions
por: Han, Heonjong, et al.
Publicado: (2018)

Plant-ImputeDB: an integrated multiple plant reference panel database for genotype imputation
por: Gao, Yingjie, et al.
Publicado: (2020)

HERB: a high-throughput experiment- and reference-guided database of traditional Chinese medicine
por: Fang, ShuangSang, et al.
Publicado: (2020)

lncRNAdb v2.0: expanding the reference database for functional long noncoding RNAs
por: Quek, Xiu Cheng, et al.
Publicado: (2014)

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
por: O'Leary, Nuala A., et al.
Publicado: (2016)

Animal-ImputeDB: a comprehensive database with multiple animal reference panels for genotype imputation
por: Yang, Wenqian, et al.
Publicado: (2020)

BACTOME—a reference database to explore the sequence- and gene expression-variation landscape of Pseudomonas aeruginosa clinical isolates
por: Hornischer, Klaus, et al.
Publicado: (2019)

IGHV allele similarity clustering improves genotype inference from adaptive immune receptor repertoire sequencing data
por: Peres, Ayelet, et al.
Publicado: (2023)

COXPRESdb v7: a gene coexpression database for 11 animal species supported by 23 coexpression platforms for technical evaluation and evolutionary inference
por: Obayashi, Takeshi, et al.
Publicado: (2019)

Islander: a database of precisely mapped genomic islands in tRNA and tmRNA genes
por: Hudson, Corey M., et al.
Publicado: (2014)

HRT Atlas v1.0 database: redefining human and mouse housekeeping genes and candidate reference transcripts by mining massive RNA-seq datasets
por: Hounkpe, Bidossessi Wilfried, et al.
Publicado: (2020)

The BioGRID interaction database: 2019 update
por: Oughtred, Rose, et al.
Publicado: (2019)

The IPD and IMGT/HLA database: allele variant databases
por: Robinson, James, et al.
Publicado: (2014)

Haemopedia RNA-seq: a database of gene expression during haematopoiesis in mice and humans
por: Choi, Jarny, et al.
Publicado: (2019)

Project Score database: a resource for investigating cancer cell dependencies and prioritizing therapeutic targets
por: Dwane, Lisa, et al.
Publicado: (2020)

The MAR databases: development and implementation of databases specific for marine metagenomics
por: Klemetsen, Terje, et al.
Publicado: (2018)

Plant editosome database: a curated database of RNA editosome in plants
por: Li, Man, et al.
Publicado: (2019)

The 2016 database issue of Nucleic Acids Research and an updated molecular biology database collection
por: Rigden, Daniel J., et al.
Publicado: (2016)

The 2018 Nucleic Acids Research database issue and the online molecular biology database collection
por: Rigden, Daniel J, et al.
Publicado: (2018)

AIRR community curation and standardised representation for immunoglobulin and T cell receptor germline sets
por: Lees, William D., et al.
Publicado: (2023)

Mouse genome database 2016
por: Bult, Carol J., et al.
Publicado: (2016)

The ChEMBL database in 2017
por: Gaulton, Anna, et al.
Publicado: (2017)

IPD-IMGT/HLA Database
por: Robinson, James, et al.
Publicado: (2020)

Ribocentre: a database of ribozymes
por: Deng, Jie, et al.
Publicado: (2022)

The IPD-IMGT/HLA Database
por: Barker, Dominic J, et al.
Publicado: (2022)

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
por: Caspi, Ron, et al.
Publicado: (2016)

The antiSMASH database, a comprehensive database of microbial secondary metabolite biosynthetic gene clusters
por: Blin, Kai, et al.
Publicado: (2017)

The MEROPS database of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database
por: Rawlings, Neil D, et al.
Publicado: (2018)

T cell receptor beta germline variability is revealed by inference from repertoire data
por: Omer, Aviv, et al.
Publicado: (2022)

NPASS database update 2023: quantitative natural product activity and species source database for biomedical research
por: Zhao, Hui, et al.
Publicado: (2022)

GENCODE reference annotation for the human and mouse genomes
por: Frankish, Adam, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_pnci9uu5ese99om4hrtemm8g0k