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Recent advances in Bayesian inference of isolation-with-migration models

Isolation-with-migration (IM) models have become popular for explaining population divergence in the presence of migrations. Bayesian methods are commonly used to estimate IM models, but they are limited to small data analysis or simple model inference. Recently three methods, IMa3, MIST, and AIM, r...

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Detalles Bibliográficos
Autor principal: Chung, Yujin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Korea Genome Organization 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6944047/
https://www.ncbi.nlm.nih.gov/pubmed/31896237
http://dx.doi.org/10.5808/GI.2019.17.4.e37
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author Chung, Yujin
author_facet Chung, Yujin
author_sort Chung, Yujin
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description Isolation-with-migration (IM) models have become popular for explaining population divergence in the presence of migrations. Bayesian methods are commonly used to estimate IM models, but they are limited to small data analysis or simple model inference. Recently three methods, IMa3, MIST, and AIM, resolved these limitations. Here, we describe the major problems addressed by these three software and compare differences among their inference methods, despite their use of the same standard likelihood function.
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spelling pubmed-69440472020-01-09 Recent advances in Bayesian inference of isolation-with-migration models Chung, Yujin Genomics Inform Review Article Isolation-with-migration (IM) models have become popular for explaining population divergence in the presence of migrations. Bayesian methods are commonly used to estimate IM models, but they are limited to small data analysis or simple model inference. Recently three methods, IMa3, MIST, and AIM, resolved these limitations. Here, we describe the major problems addressed by these three software and compare differences among their inference methods, despite their use of the same standard likelihood function. Korea Genome Organization 2019-11-13 /pmc/articles/PMC6944047/ /pubmed/31896237 http://dx.doi.org/10.5808/GI.2019.17.4.e37 Text en (c) 2019, Korea Genome Organization (CC) This is an open-access article distributed under the terms of the Creative Commons Attribution license(https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Review Article
Chung, Yujin
Recent advances in Bayesian inference of isolation-with-migration models
title Recent advances in Bayesian inference of isolation-with-migration models
title_full Recent advances in Bayesian inference of isolation-with-migration models
title_fullStr Recent advances in Bayesian inference of isolation-with-migration models
title_full_unstemmed Recent advances in Bayesian inference of isolation-with-migration models
title_short Recent advances in Bayesian inference of isolation-with-migration models
title_sort recent advances in bayesian inference of isolation-with-migration models
topic Review Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6944047/
https://www.ncbi.nlm.nih.gov/pubmed/31896237
http://dx.doi.org/10.5808/GI.2019.17.4.e37
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