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Recent advances in Bayesian inference of isolation-with-migration models
Isolation-with-migration (IM) models have become popular for explaining population divergence in the presence of migrations. Bayesian methods are commonly used to estimate IM models, but they are limited to small data analysis or simple model inference. Recently three methods, IMa3, MIST, and AIM, r...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Korea Genome Organization
2019
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6944047/ https://www.ncbi.nlm.nih.gov/pubmed/31896237 http://dx.doi.org/10.5808/GI.2019.17.4.e37 |
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author | Chung, Yujin |
author_facet | Chung, Yujin |
author_sort | Chung, Yujin |
collection | PubMed |
description | Isolation-with-migration (IM) models have become popular for explaining population divergence in the presence of migrations. Bayesian methods are commonly used to estimate IM models, but they are limited to small data analysis or simple model inference. Recently three methods, IMa3, MIST, and AIM, resolved these limitations. Here, we describe the major problems addressed by these three software and compare differences among their inference methods, despite their use of the same standard likelihood function. |
format | Online Article Text |
id | pubmed-6944047 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Korea Genome Organization |
record_format | MEDLINE/PubMed |
spelling | pubmed-69440472020-01-09 Recent advances in Bayesian inference of isolation-with-migration models Chung, Yujin Genomics Inform Review Article Isolation-with-migration (IM) models have become popular for explaining population divergence in the presence of migrations. Bayesian methods are commonly used to estimate IM models, but they are limited to small data analysis or simple model inference. Recently three methods, IMa3, MIST, and AIM, resolved these limitations. Here, we describe the major problems addressed by these three software and compare differences among their inference methods, despite their use of the same standard likelihood function. Korea Genome Organization 2019-11-13 /pmc/articles/PMC6944047/ /pubmed/31896237 http://dx.doi.org/10.5808/GI.2019.17.4.e37 Text en (c) 2019, Korea Genome Organization (CC) This is an open-access article distributed under the terms of the Creative Commons Attribution license(https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Review Article Chung, Yujin Recent advances in Bayesian inference of isolation-with-migration models |
title | Recent advances in Bayesian inference of isolation-with-migration models |
title_full | Recent advances in Bayesian inference of isolation-with-migration models |
title_fullStr | Recent advances in Bayesian inference of isolation-with-migration models |
title_full_unstemmed | Recent advances in Bayesian inference of isolation-with-migration models |
title_short | Recent advances in Bayesian inference of isolation-with-migration models |
title_sort | recent advances in bayesian inference of isolation-with-migration models |
topic | Review Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6944047/ https://www.ncbi.nlm.nih.gov/pubmed/31896237 http://dx.doi.org/10.5808/GI.2019.17.4.e37 |
work_keys_str_mv | AT chungyujin recentadvancesinbayesianinferenceofisolationwithmigrationmodels |