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Crystal structure, Hirshfeld surface analysis and DFT studies of 1-benzyl-3-[(1-benzyl-1H-1,2,3-triazol-5-yl)meth­yl]-2,3-di­hydro-1H-1,3-benzo­diazol-2-one monohydrate

In the title mol­ecule, C(24)H(21)N(5)O·H(2)O, the di­hydro­benzo­diazole moiety is not quite planar, while the whole mol­ecule adopts a U-shaped conformation in which there is a close approach of the two benzyl groups. In the crystal, chains of alternating mol­ecules and lattice water extending alo...

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Autores principales: Saber, Asmaa, Sebbar, Nada Kheira, Hökelek, Tuncer, Labd Taha, Mohamed, Mague, Joel T., Hamou Ahabchane, Noureddine, Essassi, El Mokhtar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6944078/
https://www.ncbi.nlm.nih.gov/pubmed/31921460
http://dx.doi.org/10.1107/S2056989019016876
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author Saber, Asmaa
Sebbar, Nada Kheira
Hökelek, Tuncer
Labd Taha, Mohamed
Mague, Joel T.
Hamou Ahabchane, Noureddine
Essassi, El Mokhtar
author_facet Saber, Asmaa
Sebbar, Nada Kheira
Hökelek, Tuncer
Labd Taha, Mohamed
Mague, Joel T.
Hamou Ahabchane, Noureddine
Essassi, El Mokhtar
author_sort Saber, Asmaa
collection PubMed
description In the title mol­ecule, C(24)H(21)N(5)O·H(2)O, the di­hydro­benzo­diazole moiety is not quite planar, while the whole mol­ecule adopts a U-shaped conformation in which there is a close approach of the two benzyl groups. In the crystal, chains of alternating mol­ecules and lattice water extending along [201] are formed by O—H(UncoordW)⋯O(Dhyr) and O—H(UncoordW)⋯N(Trz) (UncoordW = uncoordinated water, Dhyr = di­hydro and Trz = triazole) hydrogen bonds. The chains are connected into layers parallel to (010) by C—H(Trz)⋯O(UncoordW) hydrogen bonds with the di­hydro­benzo­diazole units in adjacent layers inter­calating to form head-to-tail π-stacking [centroid-to-centroid distance = 3.5694 (11) Å] inter­actions between them, which generates the overall three-dimensional structure. Hirshfeld surface analysis indicates that the most important contributions for the crystal packing are from H⋯H (52.1%), H⋯C/C⋯H (23.8%) and O⋯H/H⋯O (11.2%) inter­actions. Hydrogen-bonding and van der Waals inter­actions are the dominant inter­actions in the crystal packing. Density functional theory (DFT) optimized structures at the B3LYP/ 6–311 G(d,p) level are compared with the experimentally determined mol­ecular structure in the solid state. The HOMO–LUMO behaviour was elucidated to determine the energy gap.
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spelling pubmed-69440782020-01-09 Crystal structure, Hirshfeld surface analysis and DFT studies of 1-benzyl-3-[(1-benzyl-1H-1,2,3-triazol-5-yl)meth­yl]-2,3-di­hydro-1H-1,3-benzo­diazol-2-one monohydrate Saber, Asmaa Sebbar, Nada Kheira Hökelek, Tuncer Labd Taha, Mohamed Mague, Joel T. Hamou Ahabchane, Noureddine Essassi, El Mokhtar Acta Crystallogr E Crystallogr Commun Research Communications In the title mol­ecule, C(24)H(21)N(5)O·H(2)O, the di­hydro­benzo­diazole moiety is not quite planar, while the whole mol­ecule adopts a U-shaped conformation in which there is a close approach of the two benzyl groups. In the crystal, chains of alternating mol­ecules and lattice water extending along [201] are formed by O—H(UncoordW)⋯O(Dhyr) and O—H(UncoordW)⋯N(Trz) (UncoordW = uncoordinated water, Dhyr = di­hydro and Trz = triazole) hydrogen bonds. The chains are connected into layers parallel to (010) by C—H(Trz)⋯O(UncoordW) hydrogen bonds with the di­hydro­benzo­diazole units in adjacent layers inter­calating to form head-to-tail π-stacking [centroid-to-centroid distance = 3.5694 (11) Å] inter­actions between them, which generates the overall three-dimensional structure. Hirshfeld surface analysis indicates that the most important contributions for the crystal packing are from H⋯H (52.1%), H⋯C/C⋯H (23.8%) and O⋯H/H⋯O (11.2%) inter­actions. Hydrogen-bonding and van der Waals inter­actions are the dominant inter­actions in the crystal packing. Density functional theory (DFT) optimized structures at the B3LYP/ 6–311 G(d,p) level are compared with the experimentally determined mol­ecular structure in the solid state. The HOMO–LUMO behaviour was elucidated to determine the energy gap. International Union of Crystallography 2020-01-01 /pmc/articles/PMC6944078/ /pubmed/31921460 http://dx.doi.org/10.1107/S2056989019016876 Text en © Saber et al. 2020 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Research Communications
Saber, Asmaa
Sebbar, Nada Kheira
Hökelek, Tuncer
Labd Taha, Mohamed
Mague, Joel T.
Hamou Ahabchane, Noureddine
Essassi, El Mokhtar
Crystal structure, Hirshfeld surface analysis and DFT studies of 1-benzyl-3-[(1-benzyl-1H-1,2,3-triazol-5-yl)meth­yl]-2,3-di­hydro-1H-1,3-benzo­diazol-2-one monohydrate
title Crystal structure, Hirshfeld surface analysis and DFT studies of 1-benzyl-3-[(1-benzyl-1H-1,2,3-triazol-5-yl)meth­yl]-2,3-di­hydro-1H-1,3-benzo­diazol-2-one monohydrate
title_full Crystal structure, Hirshfeld surface analysis and DFT studies of 1-benzyl-3-[(1-benzyl-1H-1,2,3-triazol-5-yl)meth­yl]-2,3-di­hydro-1H-1,3-benzo­diazol-2-one monohydrate
title_fullStr Crystal structure, Hirshfeld surface analysis and DFT studies of 1-benzyl-3-[(1-benzyl-1H-1,2,3-triazol-5-yl)meth­yl]-2,3-di­hydro-1H-1,3-benzo­diazol-2-one monohydrate
title_full_unstemmed Crystal structure, Hirshfeld surface analysis and DFT studies of 1-benzyl-3-[(1-benzyl-1H-1,2,3-triazol-5-yl)meth­yl]-2,3-di­hydro-1H-1,3-benzo­diazol-2-one monohydrate
title_short Crystal structure, Hirshfeld surface analysis and DFT studies of 1-benzyl-3-[(1-benzyl-1H-1,2,3-triazol-5-yl)meth­yl]-2,3-di­hydro-1H-1,3-benzo­diazol-2-one monohydrate
title_sort crystal structure, hirshfeld surface analysis and dft studies of 1-benzyl-3-[(1-benzyl-1h-1,2,3-triazol-5-yl)meth­yl]-2,3-di­hydro-1h-1,3-benzo­diazol-2-one monohydrate
topic Research Communications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6944078/
https://www.ncbi.nlm.nih.gov/pubmed/31921460
http://dx.doi.org/10.1107/S2056989019016876
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