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Crystal structure, Hirshfeld surface analysis and DFT studies of 1-benzyl-3-[(1-benzyl-1H-1,2,3-triazol-5-yl)methyl]-2,3-dihydro-1H-1,3-benzodiazol-2-one monohydrate
In the title molecule, C(24)H(21)N(5)O·H(2)O, the dihydrobenzodiazole moiety is not quite planar, while the whole molecule adopts a U-shaped conformation in which there is a close approach of the two benzyl groups. In the crystal, chains of alternating molecules and lattice water extending alo...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6944078/ https://www.ncbi.nlm.nih.gov/pubmed/31921460 http://dx.doi.org/10.1107/S2056989019016876 |
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author | Saber, Asmaa Sebbar, Nada Kheira Hökelek, Tuncer Labd Taha, Mohamed Mague, Joel T. Hamou Ahabchane, Noureddine Essassi, El Mokhtar |
author_facet | Saber, Asmaa Sebbar, Nada Kheira Hökelek, Tuncer Labd Taha, Mohamed Mague, Joel T. Hamou Ahabchane, Noureddine Essassi, El Mokhtar |
author_sort | Saber, Asmaa |
collection | PubMed |
description | In the title molecule, C(24)H(21)N(5)O·H(2)O, the dihydrobenzodiazole moiety is not quite planar, while the whole molecule adopts a U-shaped conformation in which there is a close approach of the two benzyl groups. In the crystal, chains of alternating molecules and lattice water extending along [201] are formed by O—H(UncoordW)⋯O(Dhyr) and O—H(UncoordW)⋯N(Trz) (UncoordW = uncoordinated water, Dhyr = dihydro and Trz = triazole) hydrogen bonds. The chains are connected into layers parallel to (010) by C—H(Trz)⋯O(UncoordW) hydrogen bonds with the dihydrobenzodiazole units in adjacent layers intercalating to form head-to-tail π-stacking [centroid-to-centroid distance = 3.5694 (11) Å] interactions between them, which generates the overall three-dimensional structure. Hirshfeld surface analysis indicates that the most important contributions for the crystal packing are from H⋯H (52.1%), H⋯C/C⋯H (23.8%) and O⋯H/H⋯O (11.2%) interactions. Hydrogen-bonding and van der Waals interactions are the dominant interactions in the crystal packing. Density functional theory (DFT) optimized structures at the B3LYP/ 6–311 G(d,p) level are compared with the experimentally determined molecular structure in the solid state. The HOMO–LUMO behaviour was elucidated to determine the energy gap. |
format | Online Article Text |
id | pubmed-6944078 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-69440782020-01-09 Crystal structure, Hirshfeld surface analysis and DFT studies of 1-benzyl-3-[(1-benzyl-1H-1,2,3-triazol-5-yl)methyl]-2,3-dihydro-1H-1,3-benzodiazol-2-one monohydrate Saber, Asmaa Sebbar, Nada Kheira Hökelek, Tuncer Labd Taha, Mohamed Mague, Joel T. Hamou Ahabchane, Noureddine Essassi, El Mokhtar Acta Crystallogr E Crystallogr Commun Research Communications In the title molecule, C(24)H(21)N(5)O·H(2)O, the dihydrobenzodiazole moiety is not quite planar, while the whole molecule adopts a U-shaped conformation in which there is a close approach of the two benzyl groups. In the crystal, chains of alternating molecules and lattice water extending along [201] are formed by O—H(UncoordW)⋯O(Dhyr) and O—H(UncoordW)⋯N(Trz) (UncoordW = uncoordinated water, Dhyr = dihydro and Trz = triazole) hydrogen bonds. The chains are connected into layers parallel to (010) by C—H(Trz)⋯O(UncoordW) hydrogen bonds with the dihydrobenzodiazole units in adjacent layers intercalating to form head-to-tail π-stacking [centroid-to-centroid distance = 3.5694 (11) Å] interactions between them, which generates the overall three-dimensional structure. Hirshfeld surface analysis indicates that the most important contributions for the crystal packing are from H⋯H (52.1%), H⋯C/C⋯H (23.8%) and O⋯H/H⋯O (11.2%) interactions. Hydrogen-bonding and van der Waals interactions are the dominant interactions in the crystal packing. Density functional theory (DFT) optimized structures at the B3LYP/ 6–311 G(d,p) level are compared with the experimentally determined molecular structure in the solid state. The HOMO–LUMO behaviour was elucidated to determine the energy gap. International Union of Crystallography 2020-01-01 /pmc/articles/PMC6944078/ /pubmed/31921460 http://dx.doi.org/10.1107/S2056989019016876 Text en © Saber et al. 2020 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Research Communications Saber, Asmaa Sebbar, Nada Kheira Hökelek, Tuncer Labd Taha, Mohamed Mague, Joel T. Hamou Ahabchane, Noureddine Essassi, El Mokhtar Crystal structure, Hirshfeld surface analysis and DFT studies of 1-benzyl-3-[(1-benzyl-1H-1,2,3-triazol-5-yl)methyl]-2,3-dihydro-1H-1,3-benzodiazol-2-one monohydrate |
title | Crystal structure, Hirshfeld surface analysis and DFT studies of 1-benzyl-3-[(1-benzyl-1H-1,2,3-triazol-5-yl)methyl]-2,3-dihydro-1H-1,3-benzodiazol-2-one monohydrate |
title_full | Crystal structure, Hirshfeld surface analysis and DFT studies of 1-benzyl-3-[(1-benzyl-1H-1,2,3-triazol-5-yl)methyl]-2,3-dihydro-1H-1,3-benzodiazol-2-one monohydrate |
title_fullStr | Crystal structure, Hirshfeld surface analysis and DFT studies of 1-benzyl-3-[(1-benzyl-1H-1,2,3-triazol-5-yl)methyl]-2,3-dihydro-1H-1,3-benzodiazol-2-one monohydrate |
title_full_unstemmed | Crystal structure, Hirshfeld surface analysis and DFT studies of 1-benzyl-3-[(1-benzyl-1H-1,2,3-triazol-5-yl)methyl]-2,3-dihydro-1H-1,3-benzodiazol-2-one monohydrate |
title_short | Crystal structure, Hirshfeld surface analysis and DFT studies of 1-benzyl-3-[(1-benzyl-1H-1,2,3-triazol-5-yl)methyl]-2,3-dihydro-1H-1,3-benzodiazol-2-one monohydrate |
title_sort | crystal structure, hirshfeld surface analysis and dft studies of 1-benzyl-3-[(1-benzyl-1h-1,2,3-triazol-5-yl)methyl]-2,3-dihydro-1h-1,3-benzodiazol-2-one monohydrate |
topic | Research Communications |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6944078/ https://www.ncbi.nlm.nih.gov/pubmed/31921460 http://dx.doi.org/10.1107/S2056989019016876 |
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