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The 1:2 co-crystal formed between N,N′-bis(pyridin-4-ylmethyl)ethanediamide and benzoic acid: crystal structure, Hirshfeld surface analysis and computational study
The crystal and molecular structures of the title 1:2 co-crystal, C(14)H(14)N(4)O(2)·2C(7)H(6)O(2), are described. The oxalamide molecule has a (+)-antiperiplanar conformation with the 4-pyridyl residues lying to either side of the central, almost planar C(2)N(2)O(2) chromophore (r.m.s. deviation...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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International Union of Crystallography
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6944079/ https://www.ncbi.nlm.nih.gov/pubmed/31921461 http://dx.doi.org/10.1107/S2056989019016840 |
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author | Tan, Sang Loon Tiekink, Edward R. T. |
author_facet | Tan, Sang Loon Tiekink, Edward R. T. |
author_sort | Tan, Sang Loon |
collection | PubMed |
description | The crystal and molecular structures of the title 1:2 co-crystal, C(14)H(14)N(4)O(2)·2C(7)H(6)O(2), are described. The oxalamide molecule has a (+)-antiperiplanar conformation with the 4-pyridyl residues lying to either side of the central, almost planar C(2)N(2)O(2) chromophore (r.m.s. deviation = 0.0555 Å). The benzoic acid molecules have equivalent, close to planar conformations [C(6)/CO(2) dihedral angle = 6.33 (14) and 3.43 (10)°]. The formation of hydroxy-O—H⋯N(pyridyl) hydrogen bonds between the benzoic acid molecules and the pyridyl residues of the diamide leads to a three-molecule aggregate. Centrosymmetrically related aggregates assemble into a six-molecule aggregate via amide-N—H⋯O(amide) hydrogen bonds through a 10-membered {⋯HNC(2)O}(2) synthon. These are linked into a supramolecular tape via amide-N—H⋯O(carbonyl) hydrogen bonds and 22-membered {⋯HOCO⋯NC(4)NH}(2) synthons. The contacts between tapes to consolidate the three-dimensional architecture are of the type methylene-C—H⋯O(amide) and pyridyl-C—H⋯O(carbonyl). These interactions are largely electrostatic in nature. Additional non-covalent contacts are identified from an analysis of the calculated Hirshfeld surfaces. |
format | Online Article Text |
id | pubmed-6944079 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-69440792020-01-09 The 1:2 co-crystal formed between N,N′-bis(pyridin-4-ylmethyl)ethanediamide and benzoic acid: crystal structure, Hirshfeld surface analysis and computational study Tan, Sang Loon Tiekink, Edward R. T. Acta Crystallogr E Crystallogr Commun Research Communications The crystal and molecular structures of the title 1:2 co-crystal, C(14)H(14)N(4)O(2)·2C(7)H(6)O(2), are described. The oxalamide molecule has a (+)-antiperiplanar conformation with the 4-pyridyl residues lying to either side of the central, almost planar C(2)N(2)O(2) chromophore (r.m.s. deviation = 0.0555 Å). The benzoic acid molecules have equivalent, close to planar conformations [C(6)/CO(2) dihedral angle = 6.33 (14) and 3.43 (10)°]. The formation of hydroxy-O—H⋯N(pyridyl) hydrogen bonds between the benzoic acid molecules and the pyridyl residues of the diamide leads to a three-molecule aggregate. Centrosymmetrically related aggregates assemble into a six-molecule aggregate via amide-N—H⋯O(amide) hydrogen bonds through a 10-membered {⋯HNC(2)O}(2) synthon. These are linked into a supramolecular tape via amide-N—H⋯O(carbonyl) hydrogen bonds and 22-membered {⋯HOCO⋯NC(4)NH}(2) synthons. The contacts between tapes to consolidate the three-dimensional architecture are of the type methylene-C—H⋯O(amide) and pyridyl-C—H⋯O(carbonyl). These interactions are largely electrostatic in nature. Additional non-covalent contacts are identified from an analysis of the calculated Hirshfeld surfaces. International Union of Crystallography 2020-01-01 /pmc/articles/PMC6944079/ /pubmed/31921461 http://dx.doi.org/10.1107/S2056989019016840 Text en © Tan and Tiekink 2020 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Research Communications Tan, Sang Loon Tiekink, Edward R. T. The 1:2 co-crystal formed between N,N′-bis(pyridin-4-ylmethyl)ethanediamide and benzoic acid: crystal structure, Hirshfeld surface analysis and computational study |
title | The 1:2 co-crystal formed between N,N′-bis(pyridin-4-ylmethyl)ethanediamide and benzoic acid: crystal structure, Hirshfeld surface analysis and computational study |
title_full | The 1:2 co-crystal formed between N,N′-bis(pyridin-4-ylmethyl)ethanediamide and benzoic acid: crystal structure, Hirshfeld surface analysis and computational study |
title_fullStr | The 1:2 co-crystal formed between N,N′-bis(pyridin-4-ylmethyl)ethanediamide and benzoic acid: crystal structure, Hirshfeld surface analysis and computational study |
title_full_unstemmed | The 1:2 co-crystal formed between N,N′-bis(pyridin-4-ylmethyl)ethanediamide and benzoic acid: crystal structure, Hirshfeld surface analysis and computational study |
title_short | The 1:2 co-crystal formed between N,N′-bis(pyridin-4-ylmethyl)ethanediamide and benzoic acid: crystal structure, Hirshfeld surface analysis and computational study |
title_sort | 1:2 co-crystal formed between n,n′-bis(pyridin-4-ylmethyl)ethanediamide and benzoic acid: crystal structure, hirshfeld surface analysis and computational study |
topic | Research Communications |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6944079/ https://www.ncbi.nlm.nih.gov/pubmed/31921461 http://dx.doi.org/10.1107/S2056989019016840 |
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