Cargando…

N,N′-Bis(pyridin-3-ylmeth­yl)ethanedi­amide monohydrate: crystal structure, Hirshfeld surface analysis and computational study

The mol­ecular structure of the title bis-pyridyl substituted di­amide hydrate, C(14)H(14)N(4)O(2)·H(2)O, features a central C(2)N(2)O(2) residue (r.m.s. deviation = 0.0205 Å) linked at each end to 3-pyridyl rings through methyl­ene groups. The pyridyl rings lie to the same side of the plane, i.e. h...

Descripción completa

Detalles Bibliográficos
Autores principales: Tan, Sang Loon, Tiekink, Edward R. T.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6944093/
https://www.ncbi.nlm.nih.gov/pubmed/31921447
http://dx.doi.org/10.1107/S2056989019016153
_version_ 1783484993263108096
author Tan, Sang Loon
Tiekink, Edward R. T.
author_facet Tan, Sang Loon
Tiekink, Edward R. T.
author_sort Tan, Sang Loon
collection PubMed
description The mol­ecular structure of the title bis-pyridyl substituted di­amide hydrate, C(14)H(14)N(4)O(2)·H(2)O, features a central C(2)N(2)O(2) residue (r.m.s. deviation = 0.0205 Å) linked at each end to 3-pyridyl rings through methyl­ene groups. The pyridyl rings lie to the same side of the plane, i.e. have a syn-periplanar relationship, and form dihedral angles of 59.71 (6) and 68.42 (6)° with the central plane. An almost orthogonal relationship between the pyridyl rings is indicated by the dihedral angle between them [87.86 (5)°]. Owing to an anti disposition between the carbonyl-O atoms in the core, two intra­molecular amide-N—H⋯O(carbon­yl) hydrogen bonds are formed, each closing an S(5) loop. Supra­molecular tapes are formed in the crystal via amide-N—H⋯O(carbon­yl) hydrogen bonds and ten-membered {⋯HNC(2)O}(2) synthons. Two symmetry-related tapes are linked by a helical chain of hydrogen-bonded water mol­ecules via water-O—H⋯N(pyrid­yl) hydrogen bonds. The resulting aggregate is parallel to the b-axis direction. Links between these, via methyl­ene-C—H⋯O(water) and methyl­ene-C—H⋯π(pyrid­yl) inter­actions, give rise to a layer parallel to (10[Image: see text]); the layers stack without directional inter­actions between them. The analysis of the Hirshfeld surfaces point to the importance of the specified hydrogen-bonding inter­actions, and to the significant influence of the water mol­ecule of crystallization upon the mol­ecular packing. The analysis also indicates the contribution of methyl­ene-C—H⋯O(carbon­yl) and pyridyl-C—H⋯C(carbon­yl) contacts to the stability of the inter-layer region. The calculated inter­action energies are consistent with importance of significant electrostatic attractions in the crystal.
format Online
Article
Text
id pubmed-6944093
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher International Union of Crystallography
record_format MEDLINE/PubMed
spelling pubmed-69440932020-01-09 N,N′-Bis(pyridin-3-ylmeth­yl)ethanedi­amide monohydrate: crystal structure, Hirshfeld surface analysis and computational study Tan, Sang Loon Tiekink, Edward R. T. Acta Crystallogr E Crystallogr Commun Research Communications The mol­ecular structure of the title bis-pyridyl substituted di­amide hydrate, C(14)H(14)N(4)O(2)·H(2)O, features a central C(2)N(2)O(2) residue (r.m.s. deviation = 0.0205 Å) linked at each end to 3-pyridyl rings through methyl­ene groups. The pyridyl rings lie to the same side of the plane, i.e. have a syn-periplanar relationship, and form dihedral angles of 59.71 (6) and 68.42 (6)° with the central plane. An almost orthogonal relationship between the pyridyl rings is indicated by the dihedral angle between them [87.86 (5)°]. Owing to an anti disposition between the carbonyl-O atoms in the core, two intra­molecular amide-N—H⋯O(carbon­yl) hydrogen bonds are formed, each closing an S(5) loop. Supra­molecular tapes are formed in the crystal via amide-N—H⋯O(carbon­yl) hydrogen bonds and ten-membered {⋯HNC(2)O}(2) synthons. Two symmetry-related tapes are linked by a helical chain of hydrogen-bonded water mol­ecules via water-O—H⋯N(pyrid­yl) hydrogen bonds. The resulting aggregate is parallel to the b-axis direction. Links between these, via methyl­ene-C—H⋯O(water) and methyl­ene-C—H⋯π(pyrid­yl) inter­actions, give rise to a layer parallel to (10[Image: see text]); the layers stack without directional inter­actions between them. The analysis of the Hirshfeld surfaces point to the importance of the specified hydrogen-bonding inter­actions, and to the significant influence of the water mol­ecule of crystallization upon the mol­ecular packing. The analysis also indicates the contribution of methyl­ene-C—H⋯O(carbon­yl) and pyridyl-C—H⋯C(carbon­yl) contacts to the stability of the inter-layer region. The calculated inter­action energies are consistent with importance of significant electrostatic attractions in the crystal. International Union of Crystallography 2020-01-01 /pmc/articles/PMC6944093/ /pubmed/31921447 http://dx.doi.org/10.1107/S2056989019016153 Text en © Tan and Tiekink 2020 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Research Communications
Tan, Sang Loon
Tiekink, Edward R. T.
N,N′-Bis(pyridin-3-ylmeth­yl)ethanedi­amide monohydrate: crystal structure, Hirshfeld surface analysis and computational study
title N,N′-Bis(pyridin-3-ylmeth­yl)ethanedi­amide monohydrate: crystal structure, Hirshfeld surface analysis and computational study
title_full N,N′-Bis(pyridin-3-ylmeth­yl)ethanedi­amide monohydrate: crystal structure, Hirshfeld surface analysis and computational study
title_fullStr N,N′-Bis(pyridin-3-ylmeth­yl)ethanedi­amide monohydrate: crystal structure, Hirshfeld surface analysis and computational study
title_full_unstemmed N,N′-Bis(pyridin-3-ylmeth­yl)ethanedi­amide monohydrate: crystal structure, Hirshfeld surface analysis and computational study
title_short N,N′-Bis(pyridin-3-ylmeth­yl)ethanedi­amide monohydrate: crystal structure, Hirshfeld surface analysis and computational study
title_sort n,n′-bis(pyridin-3-ylmeth­yl)ethanedi­amide monohydrate: crystal structure, hirshfeld surface analysis and computational study
topic Research Communications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6944093/
https://www.ncbi.nlm.nih.gov/pubmed/31921447
http://dx.doi.org/10.1107/S2056989019016153
work_keys_str_mv AT tansangloon nnbispyridin3ylmethylethanediamidemonohydratecrystalstructurehirshfeldsurfaceanalysisandcomputationalstudy
AT tiekinkedwardrt nnbispyridin3ylmethylethanediamidemonohydratecrystalstructurehirshfeldsurfaceanalysisandcomputationalstudy