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Multiple interaction nodes define the postreplication repair response to UV‐induced DNA damage that is defective in melanomas and correlated with UV signature mutation load

Ultraviolet radiation‐induced DNA mutations are a primary environmental driver of melanoma. The reason for this very high level of unrepaired DNA lesions leading to these mutations is still poorly understood. The primary DNA repair mechanism for UV‐induced lesions, that is, the nucleotide excision r...

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Autores principales: Pavey, Sandra, Pinder, Alex, Fernando, Winnie, D’Arcy, Nicholas, Matigian, Nicholas, Skalamera, Dubravka, Lê Cao, Kim‐Anh, Loo‐Oey, Dorothy, Hill, Michelle M., Stark, Mitchell, Kimlin, Michael, Burgess, Andrew, Cloonan, Nicole, Sturm, Richard A., Gabrielli, Brian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6944116/
https://www.ncbi.nlm.nih.gov/pubmed/31733171
http://dx.doi.org/10.1002/1878-0261.12601
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author Pavey, Sandra
Pinder, Alex
Fernando, Winnie
D’Arcy, Nicholas
Matigian, Nicholas
Skalamera, Dubravka
Lê Cao, Kim‐Anh
Loo‐Oey, Dorothy
Hill, Michelle M.
Stark, Mitchell
Kimlin, Michael
Burgess, Andrew
Cloonan, Nicole
Sturm, Richard A.
Gabrielli, Brian
author_facet Pavey, Sandra
Pinder, Alex
Fernando, Winnie
D’Arcy, Nicholas
Matigian, Nicholas
Skalamera, Dubravka
Lê Cao, Kim‐Anh
Loo‐Oey, Dorothy
Hill, Michelle M.
Stark, Mitchell
Kimlin, Michael
Burgess, Andrew
Cloonan, Nicole
Sturm, Richard A.
Gabrielli, Brian
author_sort Pavey, Sandra
collection PubMed
description Ultraviolet radiation‐induced DNA mutations are a primary environmental driver of melanoma. The reason for this very high level of unrepaired DNA lesions leading to these mutations is still poorly understood. The primary DNA repair mechanism for UV‐induced lesions, that is, the nucleotide excision repair pathway, appears intact in most melanomas. We have previously reported a postreplication repair mechanism that is commonly defective in melanoma cell lines. Here we have used a genome‐wide approach to identify the components of this postreplication repair mechanism. We have used differential transcript polysome loading to identify transcripts that are associated with UV response, and then functionally assessed these to identify novel components of this repair and cell cycle checkpoint network. We have identified multiple interaction nodes, including global genomic nucleotide excision repair and homologous recombination repair, and previously unexpected MASTL pathway, as components of the response. Finally, we have used bioinformatics to assess the contribution of dysregulated expression of these pathways to the UV signature mutation load of a large melanoma cohort. We show that dysregulation of the pathway, especially the DNA damage repair components, are significant contributors to UV mutation load, and that dysregulation of the MASTL pathway appears to be a significant contributor to high UV signature mutation load.
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spelling pubmed-69441162020-01-07 Multiple interaction nodes define the postreplication repair response to UV‐induced DNA damage that is defective in melanomas and correlated with UV signature mutation load Pavey, Sandra Pinder, Alex Fernando, Winnie D’Arcy, Nicholas Matigian, Nicholas Skalamera, Dubravka Lê Cao, Kim‐Anh Loo‐Oey, Dorothy Hill, Michelle M. Stark, Mitchell Kimlin, Michael Burgess, Andrew Cloonan, Nicole Sturm, Richard A. Gabrielli, Brian Mol Oncol Research Articles Ultraviolet radiation‐induced DNA mutations are a primary environmental driver of melanoma. The reason for this very high level of unrepaired DNA lesions leading to these mutations is still poorly understood. The primary DNA repair mechanism for UV‐induced lesions, that is, the nucleotide excision repair pathway, appears intact in most melanomas. We have previously reported a postreplication repair mechanism that is commonly defective in melanoma cell lines. Here we have used a genome‐wide approach to identify the components of this postreplication repair mechanism. We have used differential transcript polysome loading to identify transcripts that are associated with UV response, and then functionally assessed these to identify novel components of this repair and cell cycle checkpoint network. We have identified multiple interaction nodes, including global genomic nucleotide excision repair and homologous recombination repair, and previously unexpected MASTL pathway, as components of the response. Finally, we have used bioinformatics to assess the contribution of dysregulated expression of these pathways to the UV signature mutation load of a large melanoma cohort. We show that dysregulation of the pathway, especially the DNA damage repair components, are significant contributors to UV mutation load, and that dysregulation of the MASTL pathway appears to be a significant contributor to high UV signature mutation load. John Wiley and Sons Inc. 2019-12-19 2020-01 /pmc/articles/PMC6944116/ /pubmed/31733171 http://dx.doi.org/10.1002/1878-0261.12601 Text en © 2019 The Authors. Published by FEBS Press and John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Pavey, Sandra
Pinder, Alex
Fernando, Winnie
D’Arcy, Nicholas
Matigian, Nicholas
Skalamera, Dubravka
Lê Cao, Kim‐Anh
Loo‐Oey, Dorothy
Hill, Michelle M.
Stark, Mitchell
Kimlin, Michael
Burgess, Andrew
Cloonan, Nicole
Sturm, Richard A.
Gabrielli, Brian
Multiple interaction nodes define the postreplication repair response to UV‐induced DNA damage that is defective in melanomas and correlated with UV signature mutation load
title Multiple interaction nodes define the postreplication repair response to UV‐induced DNA damage that is defective in melanomas and correlated with UV signature mutation load
title_full Multiple interaction nodes define the postreplication repair response to UV‐induced DNA damage that is defective in melanomas and correlated with UV signature mutation load
title_fullStr Multiple interaction nodes define the postreplication repair response to UV‐induced DNA damage that is defective in melanomas and correlated with UV signature mutation load
title_full_unstemmed Multiple interaction nodes define the postreplication repair response to UV‐induced DNA damage that is defective in melanomas and correlated with UV signature mutation load
title_short Multiple interaction nodes define the postreplication repair response to UV‐induced DNA damage that is defective in melanomas and correlated with UV signature mutation load
title_sort multiple interaction nodes define the postreplication repair response to uv‐induced dna damage that is defective in melanomas and correlated with uv signature mutation load
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6944116/
https://www.ncbi.nlm.nih.gov/pubmed/31733171
http://dx.doi.org/10.1002/1878-0261.12601
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