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Genome Sequencing of Musa acuminata Dwarf Cavendish Reveals a Duplication of a Large Segment of Chromosome 2
Different Musa species, subspecies, and cultivars are currently investigated to reveal their genomic diversity. Here, we compare the genome sequence of one of the commercially most important cultivars, Musa acuminata Dwarf Cavendish, against the Pahang reference genome assembly. Numerous small seque...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Genetics Society of America
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6945009/ https://www.ncbi.nlm.nih.gov/pubmed/31712258 http://dx.doi.org/10.1534/g3.119.400847 |
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author | Busche, Mareike Pucker, Boas Viehöver, Prisca Weisshaar, Bernd Stracke, Ralf |
author_facet | Busche, Mareike Pucker, Boas Viehöver, Prisca Weisshaar, Bernd Stracke, Ralf |
author_sort | Busche, Mareike |
collection | PubMed |
description | Different Musa species, subspecies, and cultivars are currently investigated to reveal their genomic diversity. Here, we compare the genome sequence of one of the commercially most important cultivars, Musa acuminata Dwarf Cavendish, against the Pahang reference genome assembly. Numerous small sequence variants were detected and the ploidy of the cultivar presented here was determined as triploid based on sequence variant frequencies. Illumina sequence data also revealed a duplication of a large segment on the long arm of chromosome 2 in the Dwarf Cavendish genome. Comparison against previously sequenced cultivars provided evidence that this duplication is unique to Dwarf Cavendish. Although no functional relevance of this duplication was identified, this example shows the potential of plants to tolerate such aneuploidies. |
format | Online Article Text |
id | pubmed-6945009 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Genetics Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-69450092020-01-09 Genome Sequencing of Musa acuminata Dwarf Cavendish Reveals a Duplication of a Large Segment of Chromosome 2 Busche, Mareike Pucker, Boas Viehöver, Prisca Weisshaar, Bernd Stracke, Ralf G3 (Bethesda) Genome Report Different Musa species, subspecies, and cultivars are currently investigated to reveal their genomic diversity. Here, we compare the genome sequence of one of the commercially most important cultivars, Musa acuminata Dwarf Cavendish, against the Pahang reference genome assembly. Numerous small sequence variants were detected and the ploidy of the cultivar presented here was determined as triploid based on sequence variant frequencies. Illumina sequence data also revealed a duplication of a large segment on the long arm of chromosome 2 in the Dwarf Cavendish genome. Comparison against previously sequenced cultivars provided evidence that this duplication is unique to Dwarf Cavendish. Although no functional relevance of this duplication was identified, this example shows the potential of plants to tolerate such aneuploidies. Genetics Society of America 2019-11-11 /pmc/articles/PMC6945009/ /pubmed/31712258 http://dx.doi.org/10.1534/g3.119.400847 Text en Copyright © 2020 Busche et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Genome Report Busche, Mareike Pucker, Boas Viehöver, Prisca Weisshaar, Bernd Stracke, Ralf Genome Sequencing of Musa acuminata Dwarf Cavendish Reveals a Duplication of a Large Segment of Chromosome 2 |
title | Genome Sequencing of Musa acuminata Dwarf Cavendish Reveals a Duplication of a Large Segment of Chromosome 2 |
title_full | Genome Sequencing of Musa acuminata Dwarf Cavendish Reveals a Duplication of a Large Segment of Chromosome 2 |
title_fullStr | Genome Sequencing of Musa acuminata Dwarf Cavendish Reveals a Duplication of a Large Segment of Chromosome 2 |
title_full_unstemmed | Genome Sequencing of Musa acuminata Dwarf Cavendish Reveals a Duplication of a Large Segment of Chromosome 2 |
title_short | Genome Sequencing of Musa acuminata Dwarf Cavendish Reveals a Duplication of a Large Segment of Chromosome 2 |
title_sort | genome sequencing of musa acuminata dwarf cavendish reveals a duplication of a large segment of chromosome 2 |
topic | Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6945009/ https://www.ncbi.nlm.nih.gov/pubmed/31712258 http://dx.doi.org/10.1534/g3.119.400847 |
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