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Cell Adhesion-Related Molecules Play a Key Role in Renal Cancer Progression by Multinetwork Analysis

Renal cell carcinoma (RCC) is one of the most common malignancies in the urinary system. The study aimed to identify genetic characteristics and reveal the underlying mechanisms in RCC. GSE53757, GSE46699, and TCGA KIRC database (n = 897) were analyzed to screen differentially expressed genes (DEGs)...

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Detalles Bibliográficos
Autores principales: Wang, Anbang, Chen, Ming, Wang, Hui, Huang, Jinming, Bao, Yi, Gan, Xinxin, Liu, Bing, Lu, Xin, Wang, Linhui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6948336/
https://www.ncbi.nlm.nih.gov/pubmed/31950034
http://dx.doi.org/10.1155/2019/2325765
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author Wang, Anbang
Chen, Ming
Wang, Hui
Huang, Jinming
Bao, Yi
Gan, Xinxin
Liu, Bing
Lu, Xin
Wang, Linhui
author_facet Wang, Anbang
Chen, Ming
Wang, Hui
Huang, Jinming
Bao, Yi
Gan, Xinxin
Liu, Bing
Lu, Xin
Wang, Linhui
author_sort Wang, Anbang
collection PubMed
description Renal cell carcinoma (RCC) is one of the most common malignancies in the urinary system. The study aimed to identify genetic characteristics and reveal the underlying mechanisms in RCC. GSE53757, GSE46699, and TCGA KIRC database (n = 897) were analyzed to screen differentially expressed genes (DEGs) in RCC. The gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were performed, followed by the analysis of the protein-protein interaction (PPI) network of the DEGs by Cytoscape software. In all, 834 DEGs were identified in RCC, including 416 upregulated genes and 418 downregulated genes. The top 10 hub genes, VEGFA, EGFR, EGF, CD44, CD86, FN1, ITGAM, ITGB2, TLR2, and PTPRC, were identified from the PPI network according to the core degree. The following subnetwork revealed that these significant modules were enriched in positive regulation of response to external stimulus, regulation of leukocyte-mediated immunity, and regulation of exocytosis. The expressions of these hub genes were also validated using qRT-PCR and IHC in Changzheng RCC database (n = 160). We especially found that half of the top ten hub genes were cell adhesion-related molecules, which were associated with RCC progression and poor prognosis. In conclusion, these hub genes, particularly cell adhesion-related molecules, could be used as prognostic biomarkers and potential therapeutic targets for RCC.
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spelling pubmed-69483362020-01-16 Cell Adhesion-Related Molecules Play a Key Role in Renal Cancer Progression by Multinetwork Analysis Wang, Anbang Chen, Ming Wang, Hui Huang, Jinming Bao, Yi Gan, Xinxin Liu, Bing Lu, Xin Wang, Linhui Biomed Res Int Research Article Renal cell carcinoma (RCC) is one of the most common malignancies in the urinary system. The study aimed to identify genetic characteristics and reveal the underlying mechanisms in RCC. GSE53757, GSE46699, and TCGA KIRC database (n = 897) were analyzed to screen differentially expressed genes (DEGs) in RCC. The gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were performed, followed by the analysis of the protein-protein interaction (PPI) network of the DEGs by Cytoscape software. In all, 834 DEGs were identified in RCC, including 416 upregulated genes and 418 downregulated genes. The top 10 hub genes, VEGFA, EGFR, EGF, CD44, CD86, FN1, ITGAM, ITGB2, TLR2, and PTPRC, were identified from the PPI network according to the core degree. The following subnetwork revealed that these significant modules were enriched in positive regulation of response to external stimulus, regulation of leukocyte-mediated immunity, and regulation of exocytosis. The expressions of these hub genes were also validated using qRT-PCR and IHC in Changzheng RCC database (n = 160). We especially found that half of the top ten hub genes were cell adhesion-related molecules, which were associated with RCC progression and poor prognosis. In conclusion, these hub genes, particularly cell adhesion-related molecules, could be used as prognostic biomarkers and potential therapeutic targets for RCC. Hindawi 2019-12-16 /pmc/articles/PMC6948336/ /pubmed/31950034 http://dx.doi.org/10.1155/2019/2325765 Text en Copyright © 2019 Anbang Wang et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Wang, Anbang
Chen, Ming
Wang, Hui
Huang, Jinming
Bao, Yi
Gan, Xinxin
Liu, Bing
Lu, Xin
Wang, Linhui
Cell Adhesion-Related Molecules Play a Key Role in Renal Cancer Progression by Multinetwork Analysis
title Cell Adhesion-Related Molecules Play a Key Role in Renal Cancer Progression by Multinetwork Analysis
title_full Cell Adhesion-Related Molecules Play a Key Role in Renal Cancer Progression by Multinetwork Analysis
title_fullStr Cell Adhesion-Related Molecules Play a Key Role in Renal Cancer Progression by Multinetwork Analysis
title_full_unstemmed Cell Adhesion-Related Molecules Play a Key Role in Renal Cancer Progression by Multinetwork Analysis
title_short Cell Adhesion-Related Molecules Play a Key Role in Renal Cancer Progression by Multinetwork Analysis
title_sort cell adhesion-related molecules play a key role in renal cancer progression by multinetwork analysis
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6948336/
https://www.ncbi.nlm.nih.gov/pubmed/31950034
http://dx.doi.org/10.1155/2019/2325765
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