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Cell Adhesion-Related Molecules Play a Key Role in Renal Cancer Progression by Multinetwork Analysis
Renal cell carcinoma (RCC) is one of the most common malignancies in the urinary system. The study aimed to identify genetic characteristics and reveal the underlying mechanisms in RCC. GSE53757, GSE46699, and TCGA KIRC database (n = 897) were analyzed to screen differentially expressed genes (DEGs)...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6948336/ https://www.ncbi.nlm.nih.gov/pubmed/31950034 http://dx.doi.org/10.1155/2019/2325765 |
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author | Wang, Anbang Chen, Ming Wang, Hui Huang, Jinming Bao, Yi Gan, Xinxin Liu, Bing Lu, Xin Wang, Linhui |
author_facet | Wang, Anbang Chen, Ming Wang, Hui Huang, Jinming Bao, Yi Gan, Xinxin Liu, Bing Lu, Xin Wang, Linhui |
author_sort | Wang, Anbang |
collection | PubMed |
description | Renal cell carcinoma (RCC) is one of the most common malignancies in the urinary system. The study aimed to identify genetic characteristics and reveal the underlying mechanisms in RCC. GSE53757, GSE46699, and TCGA KIRC database (n = 897) were analyzed to screen differentially expressed genes (DEGs) in RCC. The gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were performed, followed by the analysis of the protein-protein interaction (PPI) network of the DEGs by Cytoscape software. In all, 834 DEGs were identified in RCC, including 416 upregulated genes and 418 downregulated genes. The top 10 hub genes, VEGFA, EGFR, EGF, CD44, CD86, FN1, ITGAM, ITGB2, TLR2, and PTPRC, were identified from the PPI network according to the core degree. The following subnetwork revealed that these significant modules were enriched in positive regulation of response to external stimulus, regulation of leukocyte-mediated immunity, and regulation of exocytosis. The expressions of these hub genes were also validated using qRT-PCR and IHC in Changzheng RCC database (n = 160). We especially found that half of the top ten hub genes were cell adhesion-related molecules, which were associated with RCC progression and poor prognosis. In conclusion, these hub genes, particularly cell adhesion-related molecules, could be used as prognostic biomarkers and potential therapeutic targets for RCC. |
format | Online Article Text |
id | pubmed-6948336 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-69483362020-01-16 Cell Adhesion-Related Molecules Play a Key Role in Renal Cancer Progression by Multinetwork Analysis Wang, Anbang Chen, Ming Wang, Hui Huang, Jinming Bao, Yi Gan, Xinxin Liu, Bing Lu, Xin Wang, Linhui Biomed Res Int Research Article Renal cell carcinoma (RCC) is one of the most common malignancies in the urinary system. The study aimed to identify genetic characteristics and reveal the underlying mechanisms in RCC. GSE53757, GSE46699, and TCGA KIRC database (n = 897) were analyzed to screen differentially expressed genes (DEGs) in RCC. The gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were performed, followed by the analysis of the protein-protein interaction (PPI) network of the DEGs by Cytoscape software. In all, 834 DEGs were identified in RCC, including 416 upregulated genes and 418 downregulated genes. The top 10 hub genes, VEGFA, EGFR, EGF, CD44, CD86, FN1, ITGAM, ITGB2, TLR2, and PTPRC, were identified from the PPI network according to the core degree. The following subnetwork revealed that these significant modules were enriched in positive regulation of response to external stimulus, regulation of leukocyte-mediated immunity, and regulation of exocytosis. The expressions of these hub genes were also validated using qRT-PCR and IHC in Changzheng RCC database (n = 160). We especially found that half of the top ten hub genes were cell adhesion-related molecules, which were associated with RCC progression and poor prognosis. In conclusion, these hub genes, particularly cell adhesion-related molecules, could be used as prognostic biomarkers and potential therapeutic targets for RCC. Hindawi 2019-12-16 /pmc/articles/PMC6948336/ /pubmed/31950034 http://dx.doi.org/10.1155/2019/2325765 Text en Copyright © 2019 Anbang Wang et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Wang, Anbang Chen, Ming Wang, Hui Huang, Jinming Bao, Yi Gan, Xinxin Liu, Bing Lu, Xin Wang, Linhui Cell Adhesion-Related Molecules Play a Key Role in Renal Cancer Progression by Multinetwork Analysis |
title | Cell Adhesion-Related Molecules Play a Key Role in Renal Cancer Progression by Multinetwork Analysis |
title_full | Cell Adhesion-Related Molecules Play a Key Role in Renal Cancer Progression by Multinetwork Analysis |
title_fullStr | Cell Adhesion-Related Molecules Play a Key Role in Renal Cancer Progression by Multinetwork Analysis |
title_full_unstemmed | Cell Adhesion-Related Molecules Play a Key Role in Renal Cancer Progression by Multinetwork Analysis |
title_short | Cell Adhesion-Related Molecules Play a Key Role in Renal Cancer Progression by Multinetwork Analysis |
title_sort | cell adhesion-related molecules play a key role in renal cancer progression by multinetwork analysis |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6948336/ https://www.ncbi.nlm.nih.gov/pubmed/31950034 http://dx.doi.org/10.1155/2019/2325765 |
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