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GPU acceleration of a model-based iterative method for Digital Breast Tomosynthesis

Digital Breast Tomosynthesis (DBT) is a modern 3D Computed Tomography X-ray technique for the early detection of breast tumors, which is receiving growing interest in the medical and scientific community. Since DBT performs incomplete sampling of data, the image reconstruction approaches based on it...

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Autores principales: Cavicchioli, R., Hu, J. Cheng, Loli Piccolomini, E., Morotti, E., Zanni, L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6949234/
https://www.ncbi.nlm.nih.gov/pubmed/31913333
http://dx.doi.org/10.1038/s41598-019-56920-y
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author Cavicchioli, R.
Hu, J. Cheng
Loli Piccolomini, E.
Morotti, E.
Zanni, L.
author_facet Cavicchioli, R.
Hu, J. Cheng
Loli Piccolomini, E.
Morotti, E.
Zanni, L.
author_sort Cavicchioli, R.
collection PubMed
description Digital Breast Tomosynthesis (DBT) is a modern 3D Computed Tomography X-ray technique for the early detection of breast tumors, which is receiving growing interest in the medical and scientific community. Since DBT performs incomplete sampling of data, the image reconstruction approaches based on iterative methods are preferable to the classical analytic techniques, such as the Filtered Back Projection algorithm, providing fewer artifacts. In this work, we consider a Model-Based Iterative Reconstruction (MBIR) method well suited to describe the DBT data acquisition process and to include prior information on the reconstructed image. We propose a gradient-based solver named Scaled Gradient Projection (SGP) for the solution of the constrained optimization problem arising in the considered MBIR method. Even if the SGP algorithm exhibits fast convergence, the time required on a serial computer for the reconstruction of a real DBT data set is too long for the clinical needs. In this paper we propose a parallel SGP version designed to perform the most expensive computations of each iteration on Graphics Processing Unit (GPU). We apply the proposed parallel approach on three different GPU boards, with computational performance comparable with that of the boards usually installed in commercial DBT systems. The numerical results show that the proposed GPU-based MBIR method provides accurate reconstructions in a time suitable for clinical trials.
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spelling pubmed-69492342020-01-13 GPU acceleration of a model-based iterative method for Digital Breast Tomosynthesis Cavicchioli, R. Hu, J. Cheng Loli Piccolomini, E. Morotti, E. Zanni, L. Sci Rep Article Digital Breast Tomosynthesis (DBT) is a modern 3D Computed Tomography X-ray technique for the early detection of breast tumors, which is receiving growing interest in the medical and scientific community. Since DBT performs incomplete sampling of data, the image reconstruction approaches based on iterative methods are preferable to the classical analytic techniques, such as the Filtered Back Projection algorithm, providing fewer artifacts. In this work, we consider a Model-Based Iterative Reconstruction (MBIR) method well suited to describe the DBT data acquisition process and to include prior information on the reconstructed image. We propose a gradient-based solver named Scaled Gradient Projection (SGP) for the solution of the constrained optimization problem arising in the considered MBIR method. Even if the SGP algorithm exhibits fast convergence, the time required on a serial computer for the reconstruction of a real DBT data set is too long for the clinical needs. In this paper we propose a parallel SGP version designed to perform the most expensive computations of each iteration on Graphics Processing Unit (GPU). We apply the proposed parallel approach on three different GPU boards, with computational performance comparable with that of the boards usually installed in commercial DBT systems. The numerical results show that the proposed GPU-based MBIR method provides accurate reconstructions in a time suitable for clinical trials. Nature Publishing Group UK 2020-01-08 /pmc/articles/PMC6949234/ /pubmed/31913333 http://dx.doi.org/10.1038/s41598-019-56920-y Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Cavicchioli, R.
Hu, J. Cheng
Loli Piccolomini, E.
Morotti, E.
Zanni, L.
GPU acceleration of a model-based iterative method for Digital Breast Tomosynthesis
title GPU acceleration of a model-based iterative method for Digital Breast Tomosynthesis
title_full GPU acceleration of a model-based iterative method for Digital Breast Tomosynthesis
title_fullStr GPU acceleration of a model-based iterative method for Digital Breast Tomosynthesis
title_full_unstemmed GPU acceleration of a model-based iterative method for Digital Breast Tomosynthesis
title_short GPU acceleration of a model-based iterative method for Digital Breast Tomosynthesis
title_sort gpu acceleration of a model-based iterative method for digital breast tomosynthesis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6949234/
https://www.ncbi.nlm.nih.gov/pubmed/31913333
http://dx.doi.org/10.1038/s41598-019-56920-y
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