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Chromatin fibers stabilize nucleosomes under torsional stress

Torsional stress generated during DNA replication and transcription has been suggested to facilitate nucleosome unwrapping and thereby the progression of polymerases. However, the propagation of twist in condensed chromatin remains yet unresolved. Here, we measure how force and torque impact chromat...

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Autores principales: Kaczmarczyk, Artur, Meng, He, Ordu, Orkide, Noort, John van, Dekker, Nynke H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6949304/
https://www.ncbi.nlm.nih.gov/pubmed/31913285
http://dx.doi.org/10.1038/s41467-019-13891-y
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author Kaczmarczyk, Artur
Meng, He
Ordu, Orkide
Noort, John van
Dekker, Nynke H.
author_facet Kaczmarczyk, Artur
Meng, He
Ordu, Orkide
Noort, John van
Dekker, Nynke H.
author_sort Kaczmarczyk, Artur
collection PubMed
description Torsional stress generated during DNA replication and transcription has been suggested to facilitate nucleosome unwrapping and thereby the progression of polymerases. However, the propagation of twist in condensed chromatin remains yet unresolved. Here, we measure how force and torque impact chromatin fibers with a nucleosome repeat length of 167 and 197. We find that both types of fibers fold into a left-handed superhelix that can be stabilized by positive torsion. We observe that the structural changes induced by twist were reversible, indicating that chromatin has a large degree of elasticity. Our direct measurements of torque confirmed the hypothesis of chromatin fibers as a twist buffer. Using a statistical mechanics-based torsional spring model, we extracted values of the chromatin twist modulus and the linking number per stacked nucleosome that were in good agreement with values measured here experimentally. Overall, our findings indicate that the supercoiling generated by DNA-processing enzymes, predicted by the twin-supercoiled domain model, can be largely accommodated by the higher-order structure of chromatin.
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spelling pubmed-69493042020-01-10 Chromatin fibers stabilize nucleosomes under torsional stress Kaczmarczyk, Artur Meng, He Ordu, Orkide Noort, John van Dekker, Nynke H. Nat Commun Article Torsional stress generated during DNA replication and transcription has been suggested to facilitate nucleosome unwrapping and thereby the progression of polymerases. However, the propagation of twist in condensed chromatin remains yet unresolved. Here, we measure how force and torque impact chromatin fibers with a nucleosome repeat length of 167 and 197. We find that both types of fibers fold into a left-handed superhelix that can be stabilized by positive torsion. We observe that the structural changes induced by twist were reversible, indicating that chromatin has a large degree of elasticity. Our direct measurements of torque confirmed the hypothesis of chromatin fibers as a twist buffer. Using a statistical mechanics-based torsional spring model, we extracted values of the chromatin twist modulus and the linking number per stacked nucleosome that were in good agreement with values measured here experimentally. Overall, our findings indicate that the supercoiling generated by DNA-processing enzymes, predicted by the twin-supercoiled domain model, can be largely accommodated by the higher-order structure of chromatin. Nature Publishing Group UK 2020-01-08 /pmc/articles/PMC6949304/ /pubmed/31913285 http://dx.doi.org/10.1038/s41467-019-13891-y Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Kaczmarczyk, Artur
Meng, He
Ordu, Orkide
Noort, John van
Dekker, Nynke H.
Chromatin fibers stabilize nucleosomes under torsional stress
title Chromatin fibers stabilize nucleosomes under torsional stress
title_full Chromatin fibers stabilize nucleosomes under torsional stress
title_fullStr Chromatin fibers stabilize nucleosomes under torsional stress
title_full_unstemmed Chromatin fibers stabilize nucleosomes under torsional stress
title_short Chromatin fibers stabilize nucleosomes under torsional stress
title_sort chromatin fibers stabilize nucleosomes under torsional stress
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6949304/
https://www.ncbi.nlm.nih.gov/pubmed/31913285
http://dx.doi.org/10.1038/s41467-019-13891-y
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