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High-pressure polymorphism in pyridine
Single crystals of the high-pressure phases II and III of pyridine have been obtained by in situ crystallization at 1.09 and 1.69 GPa, revealing the crystal structure of phase III for the first time using X-ray diffraction. Phase II crystallizes in P2(1)2(1)2(1) with Z′ = 1 and phase III in P4(1)2(1...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6949594/ https://www.ncbi.nlm.nih.gov/pubmed/31949905 http://dx.doi.org/10.1107/S2052252519015616 |
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author | Giordano, Nico Beavers, Christine M. Campbell, Branton J. Eigner, Václav Gregoryanz, Eugene Marshall, Willliam G. Peña-Álvarez, Miriam Teat, Simon J. Vennari, Cara E. Parsons, Simon |
author_facet | Giordano, Nico Beavers, Christine M. Campbell, Branton J. Eigner, Václav Gregoryanz, Eugene Marshall, Willliam G. Peña-Álvarez, Miriam Teat, Simon J. Vennari, Cara E. Parsons, Simon |
author_sort | Giordano, Nico |
collection | PubMed |
description | Single crystals of the high-pressure phases II and III of pyridine have been obtained by in situ crystallization at 1.09 and 1.69 GPa, revealing the crystal structure of phase III for the first time using X-ray diffraction. Phase II crystallizes in P2(1)2(1)2(1) with Z′ = 1 and phase III in P4(1)2(1)2 with Z′ = ½. Neutron powder diffraction experiments using pyridine-d(5) establish approximate equations of state of both phases. The space group and unit-cell dimensions of phase III are similar to the structures of other simple compounds with C (2v) molecular symmetry, and the phase becomes stable at high pressure because it is topologically close-packed, resulting in a lower molar volume than the topologically body-centred cubic phase II. Phases II and III have been observed previously by Raman spectroscopy, but have been mis-identified or inconsistently named. Raman spectra collected on the same samples as used in the X-ray experiments establish the vibrational characteristics of both phases unambiguously. The pyridine molecules interact in both phases through CH⋯π and CH⋯N interactions. The nature of individual contacts is preserved through the phase transition between phases III and II, which occurs on decompression. A combination of rigid-body symmetry mode analysis and density functional theory calculations enables the soft vibrational lattice mode which governs the transformation to be identified. |
format | Online Article Text |
id | pubmed-6949594 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-69495942020-01-16 High-pressure polymorphism in pyridine Giordano, Nico Beavers, Christine M. Campbell, Branton J. Eigner, Václav Gregoryanz, Eugene Marshall, Willliam G. Peña-Álvarez, Miriam Teat, Simon J. Vennari, Cara E. Parsons, Simon IUCrJ Research Papers Single crystals of the high-pressure phases II and III of pyridine have been obtained by in situ crystallization at 1.09 and 1.69 GPa, revealing the crystal structure of phase III for the first time using X-ray diffraction. Phase II crystallizes in P2(1)2(1)2(1) with Z′ = 1 and phase III in P4(1)2(1)2 with Z′ = ½. Neutron powder diffraction experiments using pyridine-d(5) establish approximate equations of state of both phases. The space group and unit-cell dimensions of phase III are similar to the structures of other simple compounds with C (2v) molecular symmetry, and the phase becomes stable at high pressure because it is topologically close-packed, resulting in a lower molar volume than the topologically body-centred cubic phase II. Phases II and III have been observed previously by Raman spectroscopy, but have been mis-identified or inconsistently named. Raman spectra collected on the same samples as used in the X-ray experiments establish the vibrational characteristics of both phases unambiguously. The pyridine molecules interact in both phases through CH⋯π and CH⋯N interactions. The nature of individual contacts is preserved through the phase transition between phases III and II, which occurs on decompression. A combination of rigid-body symmetry mode analysis and density functional theory calculations enables the soft vibrational lattice mode which governs the transformation to be identified. International Union of Crystallography 2020-01-01 /pmc/articles/PMC6949594/ /pubmed/31949905 http://dx.doi.org/10.1107/S2052252519015616 Text en © Nico Giordano et al. 2020 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/2.0/uk/ |
spellingShingle | Research Papers Giordano, Nico Beavers, Christine M. Campbell, Branton J. Eigner, Václav Gregoryanz, Eugene Marshall, Willliam G. Peña-Álvarez, Miriam Teat, Simon J. Vennari, Cara E. Parsons, Simon High-pressure polymorphism in pyridine |
title | High-pressure polymorphism in pyridine |
title_full | High-pressure polymorphism in pyridine |
title_fullStr | High-pressure polymorphism in pyridine |
title_full_unstemmed | High-pressure polymorphism in pyridine |
title_short | High-pressure polymorphism in pyridine |
title_sort | high-pressure polymorphism in pyridine |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6949594/ https://www.ncbi.nlm.nih.gov/pubmed/31949905 http://dx.doi.org/10.1107/S2052252519015616 |
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