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Prognostic value of CLIC3 mRNA overexpression in bladder cancer
BACKGROUND: Human intracellular chloride channel 3 (CLIC3) is involved in the development of various cancers, but the expression and prognostic value of CLIC3 mRNA in bladder cancer (BC) remain unclear. METHODS: The gene expression data and clinical information of CLIC3 were obtained from the Gene E...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6951294/ https://www.ncbi.nlm.nih.gov/pubmed/31934512 http://dx.doi.org/10.7717/peerj.8348 |
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author | Chen, Mei Zhang, Shufang Wen, Xiaohong Cao, Hui Gao, Yuanhui |
author_facet | Chen, Mei Zhang, Shufang Wen, Xiaohong Cao, Hui Gao, Yuanhui |
author_sort | Chen, Mei |
collection | PubMed |
description | BACKGROUND: Human intracellular chloride channel 3 (CLIC3) is involved in the development of various cancers, but the expression and prognostic value of CLIC3 mRNA in bladder cancer (BC) remain unclear. METHODS: The gene expression data and clinical information of CLIC3 were obtained from the Gene Expression Omnibus (GEO) database and verified in the Oncomine and The Cancer Genome Atlas (TCGA) database. The expression of CLIC3 mRNA in BC tissues and adjacent normal tissues was detected by quantitative real-time polymerase chain reaction (qRT-PCR). The Kaplan-Meier method was used to analyze the relationship between the expression of CLIC3 mRNA and the prognosis of BC. Cox univariate and multivariate analyses were performed on the overall survival and tumor-specific survival of BC patients. The genes coexpressed with CLIC3 were analyzed by Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG). CLIC3-related signal transduction pathways in BC were explored with gene set enrichment analysis (GSEA). RESULTS: The expression of CLIC3 mRNA in BC tissues was higher than that in normal tissues (P < 0.01). High CLIC3 mRNA expression was associated with age (P = 0.021) and grade (P = 0.045) in BC patients. High CLIC3 mRNA expression predicted a poor prognosis in BC patients (P < 0.05). Cox univariate and multivariate analyses showed that high CLIC3 mRNA expression was associated with tumor-specific survival in BC patients (P < 0.05). Functional enrichment analyses indicated that CLIC3 may be significantly associated with the cell cycle, focal adhesion, the extracellular matrix (ECM) receptor interaction and the P53 signaling pathway. CONCLUSIONS: CLIC3 mRNA is highly expressed in BC, and its high expression is related to the adverse clinicopathological factors and prognosis of BC patients. CLIC3 can be used as a biomarker for the prognosis of BC patients. |
format | Online Article Text |
id | pubmed-6951294 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-69512942020-01-13 Prognostic value of CLIC3 mRNA overexpression in bladder cancer Chen, Mei Zhang, Shufang Wen, Xiaohong Cao, Hui Gao, Yuanhui PeerJ Bioinformatics BACKGROUND: Human intracellular chloride channel 3 (CLIC3) is involved in the development of various cancers, but the expression and prognostic value of CLIC3 mRNA in bladder cancer (BC) remain unclear. METHODS: The gene expression data and clinical information of CLIC3 were obtained from the Gene Expression Omnibus (GEO) database and verified in the Oncomine and The Cancer Genome Atlas (TCGA) database. The expression of CLIC3 mRNA in BC tissues and adjacent normal tissues was detected by quantitative real-time polymerase chain reaction (qRT-PCR). The Kaplan-Meier method was used to analyze the relationship between the expression of CLIC3 mRNA and the prognosis of BC. Cox univariate and multivariate analyses were performed on the overall survival and tumor-specific survival of BC patients. The genes coexpressed with CLIC3 were analyzed by Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG). CLIC3-related signal transduction pathways in BC were explored with gene set enrichment analysis (GSEA). RESULTS: The expression of CLIC3 mRNA in BC tissues was higher than that in normal tissues (P < 0.01). High CLIC3 mRNA expression was associated with age (P = 0.021) and grade (P = 0.045) in BC patients. High CLIC3 mRNA expression predicted a poor prognosis in BC patients (P < 0.05). Cox univariate and multivariate analyses showed that high CLIC3 mRNA expression was associated with tumor-specific survival in BC patients (P < 0.05). Functional enrichment analyses indicated that CLIC3 may be significantly associated with the cell cycle, focal adhesion, the extracellular matrix (ECM) receptor interaction and the P53 signaling pathway. CONCLUSIONS: CLIC3 mRNA is highly expressed in BC, and its high expression is related to the adverse clinicopathological factors and prognosis of BC patients. CLIC3 can be used as a biomarker for the prognosis of BC patients. PeerJ Inc. 2020-01-06 /pmc/articles/PMC6951294/ /pubmed/31934512 http://dx.doi.org/10.7717/peerj.8348 Text en ©2020 Chen et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Bioinformatics Chen, Mei Zhang, Shufang Wen, Xiaohong Cao, Hui Gao, Yuanhui Prognostic value of CLIC3 mRNA overexpression in bladder cancer |
title | Prognostic value of CLIC3 mRNA overexpression in bladder cancer |
title_full | Prognostic value of CLIC3 mRNA overexpression in bladder cancer |
title_fullStr | Prognostic value of CLIC3 mRNA overexpression in bladder cancer |
title_full_unstemmed | Prognostic value of CLIC3 mRNA overexpression in bladder cancer |
title_short | Prognostic value of CLIC3 mRNA overexpression in bladder cancer |
title_sort | prognostic value of clic3 mrna overexpression in bladder cancer |
topic | Bioinformatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6951294/ https://www.ncbi.nlm.nih.gov/pubmed/31934512 http://dx.doi.org/10.7717/peerj.8348 |
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