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Understanding the research landscape of major depressive disorder via literature mining: an entity-level analysis of PubMed data from 1948 to 2017

OBJECTIVE: To analyze literature-based data from PubMed to identify diseases and medications that have frequently been studied with major depressive disorder (MDD). MATERIALS AND METHODS: Abstracts of 23 799 research articles about MDD that have been published since 1948 till 2017 were analyzed usin...

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Autores principales: Zhu, Yongjun, Kim, Min-Hyung, Banerjee, Samprit, Deferio, Joseph, Alexopoulos, George S, Pathak, Jyotishman
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6951824/
https://www.ncbi.nlm.nih.gov/pubmed/31984323
http://dx.doi.org/10.1093/jamiaopen/ooy001
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author Zhu, Yongjun
Kim, Min-Hyung
Banerjee, Samprit
Deferio, Joseph
Alexopoulos, George S
Pathak, Jyotishman
author_facet Zhu, Yongjun
Kim, Min-Hyung
Banerjee, Samprit
Deferio, Joseph
Alexopoulos, George S
Pathak, Jyotishman
author_sort Zhu, Yongjun
collection PubMed
description OBJECTIVE: To analyze literature-based data from PubMed to identify diseases and medications that have frequently been studied with major depressive disorder (MDD). MATERIALS AND METHODS: Abstracts of 23 799 research articles about MDD that have been published since 1948 till 2017 were analyzed using data and text mining approaches. Methods such as information extraction, frequent pattern mining, regression, and burst detection were used to explore diseases and medications that have been associated with MDD. RESULTS: In addition to many mental disorders and antidepressants, we identified several nonmental health diseases and nonpsychotropic medications that have frequently been studied with MDD. Our results suggest that: (1) MDD has been studied with disorders such as Pain, Diabetes Mellitus, Wounds and Injuries, Hypertension, and Cardiovascular Diseases; (2) medications such as Hydrocortisone, Dexamethasone, Ketamine, and Lithium have been studied in terms of their side effects and off-label uses; (3) the relationships between nonmental disorders and MDD have gained increased attention from the scientific community; and (4) the bursts of Diabetes Mellitus and Cardiovascular Diseases explain the psychiatric and/or depression screening recommended by authoritative associations during the periods of the bursts. DISCUSSION AND CONCLUSION: This study summarized and presented an overview of the previous MDD research in terms of diseases and medications that are highly relevant to MDD. The reported results can potentially facilitate hypothesis generation for future studies. The approaches proposed in the study can be used to better understand the progress and advance of the field.
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spelling pubmed-69518242020-01-24 Understanding the research landscape of major depressive disorder via literature mining: an entity-level analysis of PubMed data from 1948 to 2017 Zhu, Yongjun Kim, Min-Hyung Banerjee, Samprit Deferio, Joseph Alexopoulos, George S Pathak, Jyotishman JAMIA Open Research and Applications OBJECTIVE: To analyze literature-based data from PubMed to identify diseases and medications that have frequently been studied with major depressive disorder (MDD). MATERIALS AND METHODS: Abstracts of 23 799 research articles about MDD that have been published since 1948 till 2017 were analyzed using data and text mining approaches. Methods such as information extraction, frequent pattern mining, regression, and burst detection were used to explore diseases and medications that have been associated with MDD. RESULTS: In addition to many mental disorders and antidepressants, we identified several nonmental health diseases and nonpsychotropic medications that have frequently been studied with MDD. Our results suggest that: (1) MDD has been studied with disorders such as Pain, Diabetes Mellitus, Wounds and Injuries, Hypertension, and Cardiovascular Diseases; (2) medications such as Hydrocortisone, Dexamethasone, Ketamine, and Lithium have been studied in terms of their side effects and off-label uses; (3) the relationships between nonmental disorders and MDD have gained increased attention from the scientific community; and (4) the bursts of Diabetes Mellitus and Cardiovascular Diseases explain the psychiatric and/or depression screening recommended by authoritative associations during the periods of the bursts. DISCUSSION AND CONCLUSION: This study summarized and presented an overview of the previous MDD research in terms of diseases and medications that are highly relevant to MDD. The reported results can potentially facilitate hypothesis generation for future studies. The approaches proposed in the study can be used to better understand the progress and advance of the field. Oxford University Press 2018-04-03 /pmc/articles/PMC6951824/ /pubmed/31984323 http://dx.doi.org/10.1093/jamiaopen/ooy001 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of the American Medical Informatics Association. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Research and Applications
Zhu, Yongjun
Kim, Min-Hyung
Banerjee, Samprit
Deferio, Joseph
Alexopoulos, George S
Pathak, Jyotishman
Understanding the research landscape of major depressive disorder via literature mining: an entity-level analysis of PubMed data from 1948 to 2017
title Understanding the research landscape of major depressive disorder via literature mining: an entity-level analysis of PubMed data from 1948 to 2017
title_full Understanding the research landscape of major depressive disorder via literature mining: an entity-level analysis of PubMed data from 1948 to 2017
title_fullStr Understanding the research landscape of major depressive disorder via literature mining: an entity-level analysis of PubMed data from 1948 to 2017
title_full_unstemmed Understanding the research landscape of major depressive disorder via literature mining: an entity-level analysis of PubMed data from 1948 to 2017
title_short Understanding the research landscape of major depressive disorder via literature mining: an entity-level analysis of PubMed data from 1948 to 2017
title_sort understanding the research landscape of major depressive disorder via literature mining: an entity-level analysis of pubmed data from 1948 to 2017
topic Research and Applications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6951824/
https://www.ncbi.nlm.nih.gov/pubmed/31984323
http://dx.doi.org/10.1093/jamiaopen/ooy001
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