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Biomedical informatics meets data science: current state and future directions for interaction

There are an ever-increasing number of reports and commentaries that describe the challenges and opportunities associated with the use of big data and data science (DS) in the context of biomedical education, research, and practice. These publications argue that there are substantial benefits result...

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Detalles Bibliográficos
Autores principales: Payne, Philip R O, Bernstam, Elmer V, Starren, Justin B
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6951903/
https://www.ncbi.nlm.nih.gov/pubmed/31984327
http://dx.doi.org/10.1093/jamiaopen/ooy032
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author Payne, Philip R O
Bernstam, Elmer V
Starren, Justin B
author_facet Payne, Philip R O
Bernstam, Elmer V
Starren, Justin B
author_sort Payne, Philip R O
collection PubMed
description There are an ever-increasing number of reports and commentaries that describe the challenges and opportunities associated with the use of big data and data science (DS) in the context of biomedical education, research, and practice. These publications argue that there are substantial benefits resulting from the use of data-centric approaches to solve complex biomedical problems, including an acceleration in the rate of scientific discovery, improved clinical decision making, and the ability to promote healthy behaviors at a population level. In addition, there is an aligned and emerging body of literature that describes the ethical, legal, and social issues that must be addressed to responsibly use big data in such contexts. At the same time, there has been growing recognition that the challenges and opportunities being attributed to the expansion in DS often parallel those experienced by the biomedical informatics community. Indeed, many informaticians would consider some of these issues relevant to the core theories and methods incumbent to the field of biomedical informatics science and practice. In response to this topic area, during the 2016 American College of Medical Informatics Winter Symposium, a series of presentations and focus group discussions intended to define the current state and identify future directions for interaction and collaboration between people who identify themselves as working on big data, DS, and biomedical informatics were conducted. We provide a perspective concerning these discussions and the outcomes of that meeting, and also present a set of recommendations that we have generated in response to a thematic analysis of those same outcomes. Ultimately, this report is intended to: (1) summarize the key issues currently being discussed by the biomedical informatics community as it seeks to better understand how to constructively interact with the emerging biomedical big data and DS fields; and (2) propose a framework and agenda that can serve to advance this type of constructive interaction, with mutual benefit accruing to both fields.
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spelling pubmed-69519032020-01-24 Biomedical informatics meets data science: current state and future directions for interaction Payne, Philip R O Bernstam, Elmer V Starren, Justin B JAMIA Open Perspective There are an ever-increasing number of reports and commentaries that describe the challenges and opportunities associated with the use of big data and data science (DS) in the context of biomedical education, research, and practice. These publications argue that there are substantial benefits resulting from the use of data-centric approaches to solve complex biomedical problems, including an acceleration in the rate of scientific discovery, improved clinical decision making, and the ability to promote healthy behaviors at a population level. In addition, there is an aligned and emerging body of literature that describes the ethical, legal, and social issues that must be addressed to responsibly use big data in such contexts. At the same time, there has been growing recognition that the challenges and opportunities being attributed to the expansion in DS often parallel those experienced by the biomedical informatics community. Indeed, many informaticians would consider some of these issues relevant to the core theories and methods incumbent to the field of biomedical informatics science and practice. In response to this topic area, during the 2016 American College of Medical Informatics Winter Symposium, a series of presentations and focus group discussions intended to define the current state and identify future directions for interaction and collaboration between people who identify themselves as working on big data, DS, and biomedical informatics were conducted. We provide a perspective concerning these discussions and the outcomes of that meeting, and also present a set of recommendations that we have generated in response to a thematic analysis of those same outcomes. Ultimately, this report is intended to: (1) summarize the key issues currently being discussed by the biomedical informatics community as it seeks to better understand how to constructively interact with the emerging biomedical big data and DS fields; and (2) propose a framework and agenda that can serve to advance this type of constructive interaction, with mutual benefit accruing to both fields. Oxford University Press 2018-08-09 /pmc/articles/PMC6951903/ /pubmed/31984327 http://dx.doi.org/10.1093/jamiaopen/ooy032 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of the American Medical Informatics Association. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Perspective
Payne, Philip R O
Bernstam, Elmer V
Starren, Justin B
Biomedical informatics meets data science: current state and future directions for interaction
title Biomedical informatics meets data science: current state and future directions for interaction
title_full Biomedical informatics meets data science: current state and future directions for interaction
title_fullStr Biomedical informatics meets data science: current state and future directions for interaction
title_full_unstemmed Biomedical informatics meets data science: current state and future directions for interaction
title_short Biomedical informatics meets data science: current state and future directions for interaction
title_sort biomedical informatics meets data science: current state and future directions for interaction
topic Perspective
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6951903/
https://www.ncbi.nlm.nih.gov/pubmed/31984327
http://dx.doi.org/10.1093/jamiaopen/ooy032
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