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Deep learning approach for automatic out-of-plane needle localisation for semi-automatic ultrasound probe calibration

The authors present a deep learning algorithm for the automatic centroid localisation of out-of-plane US needle reflections to produce a semi-automatic ultrasound (US) probe calibration algorithm. A convolutional neural network was trained on a dataset of 3825 images at a 6 cm imaging depth to predi...

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Autores principales: Groves, Leah A., VanBerlo, Blake, Peters, Terry M., Chen, Elvis C.S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Institution of Engineering and Technology 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6952243/
https://www.ncbi.nlm.nih.gov/pubmed/32038858
http://dx.doi.org/10.1049/htl.2019.0075
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author Groves, Leah A.
VanBerlo, Blake
Peters, Terry M.
Chen, Elvis C.S.
author_facet Groves, Leah A.
VanBerlo, Blake
Peters, Terry M.
Chen, Elvis C.S.
author_sort Groves, Leah A.
collection PubMed
description The authors present a deep learning algorithm for the automatic centroid localisation of out-of-plane US needle reflections to produce a semi-automatic ultrasound (US) probe calibration algorithm. A convolutional neural network was trained on a dataset of 3825 images at a 6 cm imaging depth to predict the position of the centroid of a needle reflection. Applying the automatic centroid localisation algorithm to a test set of 614 annotated images produced a root mean squared error of 0.62 and 0.74 mm (6.08 and 7.62 pixels) in the axial and lateral directions, respectively. The mean absolute errors associated with the test set were 0.50 ± 0.40 mm and 0.51 ± 0.54 mm (4.9 ± 3.96 pixels and 5.24 ± 5.52 pixels) for the axial and lateral directions, respectively. The trained model was able to produce visually validated US probe calibrations at imaging depths on the range of 4–8 cm, despite being solely trained at 6 cm. This work has automated the pixel localisation required for the guided-US calibration algorithm producing a semi-automatic implementation available open-source through 3D Slicer. The automatic needle centroid localisation improves the usability of the algorithm and has the potential to decrease the fiducial localisation and target registration errors associated with the guided-US calibration method.
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spelling pubmed-69522432020-02-07 Deep learning approach for automatic out-of-plane needle localisation for semi-automatic ultrasound probe calibration Groves, Leah A. VanBerlo, Blake Peters, Terry M. Chen, Elvis C.S. Healthc Technol Lett Special Issue: Papers from the 13th Workshop on Augmented Environments for Computer Assisted Interventions The authors present a deep learning algorithm for the automatic centroid localisation of out-of-plane US needle reflections to produce a semi-automatic ultrasound (US) probe calibration algorithm. A convolutional neural network was trained on a dataset of 3825 images at a 6 cm imaging depth to predict the position of the centroid of a needle reflection. Applying the automatic centroid localisation algorithm to a test set of 614 annotated images produced a root mean squared error of 0.62 and 0.74 mm (6.08 and 7.62 pixels) in the axial and lateral directions, respectively. The mean absolute errors associated with the test set were 0.50 ± 0.40 mm and 0.51 ± 0.54 mm (4.9 ± 3.96 pixels and 5.24 ± 5.52 pixels) for the axial and lateral directions, respectively. The trained model was able to produce visually validated US probe calibrations at imaging depths on the range of 4–8 cm, despite being solely trained at 6 cm. This work has automated the pixel localisation required for the guided-US calibration algorithm producing a semi-automatic implementation available open-source through 3D Slicer. The automatic needle centroid localisation improves the usability of the algorithm and has the potential to decrease the fiducial localisation and target registration errors associated with the guided-US calibration method. The Institution of Engineering and Technology 2019-12-02 /pmc/articles/PMC6952243/ /pubmed/32038858 http://dx.doi.org/10.1049/htl.2019.0075 Text en http://creativecommons.org/licenses/by/3.0/ This is an open access article published by the IET under the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/)
spellingShingle Special Issue: Papers from the 13th Workshop on Augmented Environments for Computer Assisted Interventions
Groves, Leah A.
VanBerlo, Blake
Peters, Terry M.
Chen, Elvis C.S.
Deep learning approach for automatic out-of-plane needle localisation for semi-automatic ultrasound probe calibration
title Deep learning approach for automatic out-of-plane needle localisation for semi-automatic ultrasound probe calibration
title_full Deep learning approach for automatic out-of-plane needle localisation for semi-automatic ultrasound probe calibration
title_fullStr Deep learning approach for automatic out-of-plane needle localisation for semi-automatic ultrasound probe calibration
title_full_unstemmed Deep learning approach for automatic out-of-plane needle localisation for semi-automatic ultrasound probe calibration
title_short Deep learning approach for automatic out-of-plane needle localisation for semi-automatic ultrasound probe calibration
title_sort deep learning approach for automatic out-of-plane needle localisation for semi-automatic ultrasound probe calibration
topic Special Issue: Papers from the 13th Workshop on Augmented Environments for Computer Assisted Interventions
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6952243/
https://www.ncbi.nlm.nih.gov/pubmed/32038858
http://dx.doi.org/10.1049/htl.2019.0075
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