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Deep learning approach for automatic out-of-plane needle localisation for semi-automatic ultrasound probe calibration
The authors present a deep learning algorithm for the automatic centroid localisation of out-of-plane US needle reflections to produce a semi-automatic ultrasound (US) probe calibration algorithm. A convolutional neural network was trained on a dataset of 3825 images at a 6 cm imaging depth to predi...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Institution of Engineering and Technology
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6952243/ https://www.ncbi.nlm.nih.gov/pubmed/32038858 http://dx.doi.org/10.1049/htl.2019.0075 |
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author | Groves, Leah A. VanBerlo, Blake Peters, Terry M. Chen, Elvis C.S. |
author_facet | Groves, Leah A. VanBerlo, Blake Peters, Terry M. Chen, Elvis C.S. |
author_sort | Groves, Leah A. |
collection | PubMed |
description | The authors present a deep learning algorithm for the automatic centroid localisation of out-of-plane US needle reflections to produce a semi-automatic ultrasound (US) probe calibration algorithm. A convolutional neural network was trained on a dataset of 3825 images at a 6 cm imaging depth to predict the position of the centroid of a needle reflection. Applying the automatic centroid localisation algorithm to a test set of 614 annotated images produced a root mean squared error of 0.62 and 0.74 mm (6.08 and 7.62 pixels) in the axial and lateral directions, respectively. The mean absolute errors associated with the test set were 0.50 ± 0.40 mm and 0.51 ± 0.54 mm (4.9 ± 3.96 pixels and 5.24 ± 5.52 pixels) for the axial and lateral directions, respectively. The trained model was able to produce visually validated US probe calibrations at imaging depths on the range of 4–8 cm, despite being solely trained at 6 cm. This work has automated the pixel localisation required for the guided-US calibration algorithm producing a semi-automatic implementation available open-source through 3D Slicer. The automatic needle centroid localisation improves the usability of the algorithm and has the potential to decrease the fiducial localisation and target registration errors associated with the guided-US calibration method. |
format | Online Article Text |
id | pubmed-6952243 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | The Institution of Engineering and Technology |
record_format | MEDLINE/PubMed |
spelling | pubmed-69522432020-02-07 Deep learning approach for automatic out-of-plane needle localisation for semi-automatic ultrasound probe calibration Groves, Leah A. VanBerlo, Blake Peters, Terry M. Chen, Elvis C.S. Healthc Technol Lett Special Issue: Papers from the 13th Workshop on Augmented Environments for Computer Assisted Interventions The authors present a deep learning algorithm for the automatic centroid localisation of out-of-plane US needle reflections to produce a semi-automatic ultrasound (US) probe calibration algorithm. A convolutional neural network was trained on a dataset of 3825 images at a 6 cm imaging depth to predict the position of the centroid of a needle reflection. Applying the automatic centroid localisation algorithm to a test set of 614 annotated images produced a root mean squared error of 0.62 and 0.74 mm (6.08 and 7.62 pixels) in the axial and lateral directions, respectively. The mean absolute errors associated with the test set were 0.50 ± 0.40 mm and 0.51 ± 0.54 mm (4.9 ± 3.96 pixels and 5.24 ± 5.52 pixels) for the axial and lateral directions, respectively. The trained model was able to produce visually validated US probe calibrations at imaging depths on the range of 4–8 cm, despite being solely trained at 6 cm. This work has automated the pixel localisation required for the guided-US calibration algorithm producing a semi-automatic implementation available open-source through 3D Slicer. The automatic needle centroid localisation improves the usability of the algorithm and has the potential to decrease the fiducial localisation and target registration errors associated with the guided-US calibration method. The Institution of Engineering and Technology 2019-12-02 /pmc/articles/PMC6952243/ /pubmed/32038858 http://dx.doi.org/10.1049/htl.2019.0075 Text en http://creativecommons.org/licenses/by/3.0/ This is an open access article published by the IET under the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/) |
spellingShingle | Special Issue: Papers from the 13th Workshop on Augmented Environments for Computer Assisted Interventions Groves, Leah A. VanBerlo, Blake Peters, Terry M. Chen, Elvis C.S. Deep learning approach for automatic out-of-plane needle localisation for semi-automatic ultrasound probe calibration |
title | Deep learning approach for automatic out-of-plane needle localisation for semi-automatic ultrasound probe calibration |
title_full | Deep learning approach for automatic out-of-plane needle localisation for semi-automatic ultrasound probe calibration |
title_fullStr | Deep learning approach for automatic out-of-plane needle localisation for semi-automatic ultrasound probe calibration |
title_full_unstemmed | Deep learning approach for automatic out-of-plane needle localisation for semi-automatic ultrasound probe calibration |
title_short | Deep learning approach for automatic out-of-plane needle localisation for semi-automatic ultrasound probe calibration |
title_sort | deep learning approach for automatic out-of-plane needle localisation for semi-automatic ultrasound probe calibration |
topic | Special Issue: Papers from the 13th Workshop on Augmented Environments for Computer Assisted Interventions |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6952243/ https://www.ncbi.nlm.nih.gov/pubmed/32038858 http://dx.doi.org/10.1049/htl.2019.0075 |
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