Cargando…
Computational exploration of molecular receptive fields in the olfactory bulb reveals a glomerulus-centric chemical map
Progress in olfactory research is currently hampered by incomplete knowledge about chemical receptive ranges of primary receptors. Moreover, the chemical logic underlying the arrangement of computational units in the olfactory bulb has still not been resolved. We undertook a large-scale approach at...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6952415/ https://www.ncbi.nlm.nih.gov/pubmed/31919393 http://dx.doi.org/10.1038/s41598-019-56863-4 |
_version_ | 1783486444894945280 |
---|---|
author | Soelter, Jan Schumacher, Jan Spors, Hartwig Schmuker, Michael |
author_facet | Soelter, Jan Schumacher, Jan Spors, Hartwig Schmuker, Michael |
author_sort | Soelter, Jan |
collection | PubMed |
description | Progress in olfactory research is currently hampered by incomplete knowledge about chemical receptive ranges of primary receptors. Moreover, the chemical logic underlying the arrangement of computational units in the olfactory bulb has still not been resolved. We undertook a large-scale approach at characterising molecular receptive ranges (MRRs) of glomeruli in the dorsal olfactory bulb (dOB) innervated by the MOR18-2 olfactory receptor, also known as Olfr78, with human ortholog OR51E2. Guided by an iterative approach that combined biological screening and machine learning, we selected 214 odorants to characterise the response of MOR18-2 and its neighbouring glomeruli. We found that a combination of conventional physico-chemical and vibrational molecular descriptors performed best in predicting glomerular responses using nonlinear Support-Vector Regression. We also discovered several previously unknown odorants activating MOR18-2 glomeruli, and obtained detailed MRRs of MOR18-2 glomeruli and their neighbours. Our results confirm earlier findings that demonstrated tunotopy, that is, glomeruli with similar tuning curves tend to be located in spatial proximity in the dOB. In addition, our results indicate chemotopy, that is, a preference for glomeruli with similar physico-chemical MRR descriptions being located in spatial proximity. Together, these findings suggest the existence of a partial chemical map underlying glomerular arrangement in the dOB. Our methodology that combines machine learning and physiological measurements lights the way towards future high-throughput studies to deorphanise and characterise structure-activity relationships in olfaction. |
format | Online Article Text |
id | pubmed-6952415 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-69524152020-01-13 Computational exploration of molecular receptive fields in the olfactory bulb reveals a glomerulus-centric chemical map Soelter, Jan Schumacher, Jan Spors, Hartwig Schmuker, Michael Sci Rep Article Progress in olfactory research is currently hampered by incomplete knowledge about chemical receptive ranges of primary receptors. Moreover, the chemical logic underlying the arrangement of computational units in the olfactory bulb has still not been resolved. We undertook a large-scale approach at characterising molecular receptive ranges (MRRs) of glomeruli in the dorsal olfactory bulb (dOB) innervated by the MOR18-2 olfactory receptor, also known as Olfr78, with human ortholog OR51E2. Guided by an iterative approach that combined biological screening and machine learning, we selected 214 odorants to characterise the response of MOR18-2 and its neighbouring glomeruli. We found that a combination of conventional physico-chemical and vibrational molecular descriptors performed best in predicting glomerular responses using nonlinear Support-Vector Regression. We also discovered several previously unknown odorants activating MOR18-2 glomeruli, and obtained detailed MRRs of MOR18-2 glomeruli and their neighbours. Our results confirm earlier findings that demonstrated tunotopy, that is, glomeruli with similar tuning curves tend to be located in spatial proximity in the dOB. In addition, our results indicate chemotopy, that is, a preference for glomeruli with similar physico-chemical MRR descriptions being located in spatial proximity. Together, these findings suggest the existence of a partial chemical map underlying glomerular arrangement in the dOB. Our methodology that combines machine learning and physiological measurements lights the way towards future high-throughput studies to deorphanise and characterise structure-activity relationships in olfaction. Nature Publishing Group UK 2020-01-09 /pmc/articles/PMC6952415/ /pubmed/31919393 http://dx.doi.org/10.1038/s41598-019-56863-4 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Soelter, Jan Schumacher, Jan Spors, Hartwig Schmuker, Michael Computational exploration of molecular receptive fields in the olfactory bulb reveals a glomerulus-centric chemical map |
title | Computational exploration of molecular receptive fields in the olfactory bulb reveals a glomerulus-centric chemical map |
title_full | Computational exploration of molecular receptive fields in the olfactory bulb reveals a glomerulus-centric chemical map |
title_fullStr | Computational exploration of molecular receptive fields in the olfactory bulb reveals a glomerulus-centric chemical map |
title_full_unstemmed | Computational exploration of molecular receptive fields in the olfactory bulb reveals a glomerulus-centric chemical map |
title_short | Computational exploration of molecular receptive fields in the olfactory bulb reveals a glomerulus-centric chemical map |
title_sort | computational exploration of molecular receptive fields in the olfactory bulb reveals a glomerulus-centric chemical map |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6952415/ https://www.ncbi.nlm.nih.gov/pubmed/31919393 http://dx.doi.org/10.1038/s41598-019-56863-4 |
work_keys_str_mv | AT soelterjan computationalexplorationofmolecularreceptivefieldsintheolfactorybulbrevealsaglomeruluscentricchemicalmap AT schumacherjan computationalexplorationofmolecularreceptivefieldsintheolfactorybulbrevealsaglomeruluscentricchemicalmap AT sporshartwig computationalexplorationofmolecularreceptivefieldsintheolfactorybulbrevealsaglomeruluscentricchemicalmap AT schmukermichael computationalexplorationofmolecularreceptivefieldsintheolfactorybulbrevealsaglomeruluscentricchemicalmap |