Cargando…

Evaluation of the predictive ability of ultrasound-based assessment of breast cancer using BI-RADS natural language reporting against commercial transcriptome-based tests

PURPOSE: The objective of this study was to assess the classification capability of Breast Imaging Reporting and Data System (BI-RADS) ultrasound feature descriptors targeting established commercial transcriptomic gene signatures that guide management of breast cancer. MATERIALS AND METHODS: This re...

Descripción completa

Detalles Bibliográficos
Autores principales: Jamshidii, Neema, Chang, Jason, Mock, Kyle, Nguyen, Brian, Dauphine, Christine, Kuo, Michael D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6953781/
https://www.ncbi.nlm.nih.gov/pubmed/31923222
http://dx.doi.org/10.1371/journal.pone.0226634
_version_ 1783486674914770944
author Jamshidii, Neema
Chang, Jason
Mock, Kyle
Nguyen, Brian
Dauphine, Christine
Kuo, Michael D.
author_facet Jamshidii, Neema
Chang, Jason
Mock, Kyle
Nguyen, Brian
Dauphine, Christine
Kuo, Michael D.
author_sort Jamshidii, Neema
collection PubMed
description PURPOSE: The objective of this study was to assess the classification capability of Breast Imaging Reporting and Data System (BI-RADS) ultrasound feature descriptors targeting established commercial transcriptomic gene signatures that guide management of breast cancer. MATERIALS AND METHODS: This retrospective, single-institution analysis of 219 patients involved two cohorts using one of two FDA approved transcriptome-based tests that were performed as part of the clinical care of breast cancer patients at Harbor-UCLA Medical Center between April 2008 and January 2013. BI-RADS descriptive terminology was collected from the corresponding ultrasound reports for each patient in conjunction with transcriptomic test results. Recursive partitioning and regression trees were used to test and validate classification of the two cohorts. RESULTS: The area under the curve (AUC) of the receiver operator curves (ROC) for the regression classifier between the two FDA approved tests and ultrasound features were 0.77 and 0.65, respectively; they employed the ‘margins’, ‘retrotumoral’, and ‘internal echoes’ feature descriptors. Notably, the ‘retrotumoral’ and mass ‘margins’ features were used in both classification trees. The identification of sonographic correlates of gene tests provides added value to the ultrasound exam without incurring additional procedures or testing. CONCLUSIONS: The predictive capability using structured language from diagnostic ultrasound reports (BI-RADS) was moderate for the two tests, and provides added value from ultrasound imaging without incurring any additional costs. Incorporation of additional measures, such as ultrasound contrast enhancement, with validation in larger, prospective studies may further substantiate these results and potentially demonstrate even greater predictive utility.
format Online
Article
Text
id pubmed-6953781
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-69537812020-01-21 Evaluation of the predictive ability of ultrasound-based assessment of breast cancer using BI-RADS natural language reporting against commercial transcriptome-based tests Jamshidii, Neema Chang, Jason Mock, Kyle Nguyen, Brian Dauphine, Christine Kuo, Michael D. PLoS One Research Article PURPOSE: The objective of this study was to assess the classification capability of Breast Imaging Reporting and Data System (BI-RADS) ultrasound feature descriptors targeting established commercial transcriptomic gene signatures that guide management of breast cancer. MATERIALS AND METHODS: This retrospective, single-institution analysis of 219 patients involved two cohorts using one of two FDA approved transcriptome-based tests that were performed as part of the clinical care of breast cancer patients at Harbor-UCLA Medical Center between April 2008 and January 2013. BI-RADS descriptive terminology was collected from the corresponding ultrasound reports for each patient in conjunction with transcriptomic test results. Recursive partitioning and regression trees were used to test and validate classification of the two cohorts. RESULTS: The area under the curve (AUC) of the receiver operator curves (ROC) for the regression classifier between the two FDA approved tests and ultrasound features were 0.77 and 0.65, respectively; they employed the ‘margins’, ‘retrotumoral’, and ‘internal echoes’ feature descriptors. Notably, the ‘retrotumoral’ and mass ‘margins’ features were used in both classification trees. The identification of sonographic correlates of gene tests provides added value to the ultrasound exam without incurring additional procedures or testing. CONCLUSIONS: The predictive capability using structured language from diagnostic ultrasound reports (BI-RADS) was moderate for the two tests, and provides added value from ultrasound imaging without incurring any additional costs. Incorporation of additional measures, such as ultrasound contrast enhancement, with validation in larger, prospective studies may further substantiate these results and potentially demonstrate even greater predictive utility. Public Library of Science 2020-01-10 /pmc/articles/PMC6953781/ /pubmed/31923222 http://dx.doi.org/10.1371/journal.pone.0226634 Text en © 2020 Jamshidii et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Jamshidii, Neema
Chang, Jason
Mock, Kyle
Nguyen, Brian
Dauphine, Christine
Kuo, Michael D.
Evaluation of the predictive ability of ultrasound-based assessment of breast cancer using BI-RADS natural language reporting against commercial transcriptome-based tests
title Evaluation of the predictive ability of ultrasound-based assessment of breast cancer using BI-RADS natural language reporting against commercial transcriptome-based tests
title_full Evaluation of the predictive ability of ultrasound-based assessment of breast cancer using BI-RADS natural language reporting against commercial transcriptome-based tests
title_fullStr Evaluation of the predictive ability of ultrasound-based assessment of breast cancer using BI-RADS natural language reporting against commercial transcriptome-based tests
title_full_unstemmed Evaluation of the predictive ability of ultrasound-based assessment of breast cancer using BI-RADS natural language reporting against commercial transcriptome-based tests
title_short Evaluation of the predictive ability of ultrasound-based assessment of breast cancer using BI-RADS natural language reporting against commercial transcriptome-based tests
title_sort evaluation of the predictive ability of ultrasound-based assessment of breast cancer using bi-rads natural language reporting against commercial transcriptome-based tests
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6953781/
https://www.ncbi.nlm.nih.gov/pubmed/31923222
http://dx.doi.org/10.1371/journal.pone.0226634
work_keys_str_mv AT jamshidiineema evaluationofthepredictiveabilityofultrasoundbasedassessmentofbreastcancerusingbiradsnaturallanguagereportingagainstcommercialtranscriptomebasedtests
AT changjason evaluationofthepredictiveabilityofultrasoundbasedassessmentofbreastcancerusingbiradsnaturallanguagereportingagainstcommercialtranscriptomebasedtests
AT mockkyle evaluationofthepredictiveabilityofultrasoundbasedassessmentofbreastcancerusingbiradsnaturallanguagereportingagainstcommercialtranscriptomebasedtests
AT nguyenbrian evaluationofthepredictiveabilityofultrasoundbasedassessmentofbreastcancerusingbiradsnaturallanguagereportingagainstcommercialtranscriptomebasedtests
AT dauphinechristine evaluationofthepredictiveabilityofultrasoundbasedassessmentofbreastcancerusingbiradsnaturallanguagereportingagainstcommercialtranscriptomebasedtests
AT kuomichaeld evaluationofthepredictiveabilityofultrasoundbasedassessmentofbreastcancerusingbiradsnaturallanguagereportingagainstcommercialtranscriptomebasedtests