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Surface enhanced Raman scattering artificial nose for high dimensionality fingerprinting

Label-free surface-enhanced Raman spectroscopy (SERS) can interrogate systems by directly fingerprinting their components’ unique physicochemical properties. In complex biological systems however, this can yield highly overlapping spectra that hinder sample identification. Here, we present an artifi...

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Autores principales: Kim, Nayoung, Thomas, Michael R., Bergholt, Mads S., Pence, Isaac J., Seong, Hyejeong, Charchar, Patrick, Todorova, Nevena, Nagelkerke, Anika, Belessiotis-Richards, Alexis, Payne, David J., Gelmi, Amy, Yarovsky, Irene, Stevens, Molly M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6954179/
https://www.ncbi.nlm.nih.gov/pubmed/31924755
http://dx.doi.org/10.1038/s41467-019-13615-2
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author Kim, Nayoung
Thomas, Michael R.
Bergholt, Mads S.
Pence, Isaac J.
Seong, Hyejeong
Charchar, Patrick
Todorova, Nevena
Nagelkerke, Anika
Belessiotis-Richards, Alexis
Payne, David J.
Gelmi, Amy
Yarovsky, Irene
Stevens, Molly M.
author_facet Kim, Nayoung
Thomas, Michael R.
Bergholt, Mads S.
Pence, Isaac J.
Seong, Hyejeong
Charchar, Patrick
Todorova, Nevena
Nagelkerke, Anika
Belessiotis-Richards, Alexis
Payne, David J.
Gelmi, Amy
Yarovsky, Irene
Stevens, Molly M.
author_sort Kim, Nayoung
collection PubMed
description Label-free surface-enhanced Raman spectroscopy (SERS) can interrogate systems by directly fingerprinting their components’ unique physicochemical properties. In complex biological systems however, this can yield highly overlapping spectra that hinder sample identification. Here, we present an artificial-nose inspired SERS fingerprinting approach where spectral data is obtained as a function of sensor surface chemical functionality. Supported by molecular dynamics modeling, we show that mildly selective self-assembled monolayers can influence the strength and configuration in which analytes interact with plasmonic surfaces, diversifying the resulting SERS fingerprints. Since each sensor generates a modulated signature, the implicit value of increasing the dimensionality of datasets is shown using cell lysates for all possible combinations of up to 9 fingerprints. Reliable improvements in mean discriminatory accuracy towards 100% are achieved with each additional surface functionality. This arrayed label-free platform illustrates the wide-ranging potential of high-dimensionality artificial-nose based sensing systems for more reliable assessment of complex biological matrices.
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spelling pubmed-69541792020-01-13 Surface enhanced Raman scattering artificial nose for high dimensionality fingerprinting Kim, Nayoung Thomas, Michael R. Bergholt, Mads S. Pence, Isaac J. Seong, Hyejeong Charchar, Patrick Todorova, Nevena Nagelkerke, Anika Belessiotis-Richards, Alexis Payne, David J. Gelmi, Amy Yarovsky, Irene Stevens, Molly M. Nat Commun Article Label-free surface-enhanced Raman spectroscopy (SERS) can interrogate systems by directly fingerprinting their components’ unique physicochemical properties. In complex biological systems however, this can yield highly overlapping spectra that hinder sample identification. Here, we present an artificial-nose inspired SERS fingerprinting approach where spectral data is obtained as a function of sensor surface chemical functionality. Supported by molecular dynamics modeling, we show that mildly selective self-assembled monolayers can influence the strength and configuration in which analytes interact with plasmonic surfaces, diversifying the resulting SERS fingerprints. Since each sensor generates a modulated signature, the implicit value of increasing the dimensionality of datasets is shown using cell lysates for all possible combinations of up to 9 fingerprints. Reliable improvements in mean discriminatory accuracy towards 100% are achieved with each additional surface functionality. This arrayed label-free platform illustrates the wide-ranging potential of high-dimensionality artificial-nose based sensing systems for more reliable assessment of complex biological matrices. Nature Publishing Group UK 2020-01-10 /pmc/articles/PMC6954179/ /pubmed/31924755 http://dx.doi.org/10.1038/s41467-019-13615-2 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Kim, Nayoung
Thomas, Michael R.
Bergholt, Mads S.
Pence, Isaac J.
Seong, Hyejeong
Charchar, Patrick
Todorova, Nevena
Nagelkerke, Anika
Belessiotis-Richards, Alexis
Payne, David J.
Gelmi, Amy
Yarovsky, Irene
Stevens, Molly M.
Surface enhanced Raman scattering artificial nose for high dimensionality fingerprinting
title Surface enhanced Raman scattering artificial nose for high dimensionality fingerprinting
title_full Surface enhanced Raman scattering artificial nose for high dimensionality fingerprinting
title_fullStr Surface enhanced Raman scattering artificial nose for high dimensionality fingerprinting
title_full_unstemmed Surface enhanced Raman scattering artificial nose for high dimensionality fingerprinting
title_short Surface enhanced Raman scattering artificial nose for high dimensionality fingerprinting
title_sort surface enhanced raman scattering artificial nose for high dimensionality fingerprinting
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6954179/
https://www.ncbi.nlm.nih.gov/pubmed/31924755
http://dx.doi.org/10.1038/s41467-019-13615-2
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