Cargando…

Decoding crystallography from high-resolution electron imaging and diffraction datasets with deep learning

While machine learning has been making enormous strides in many technical areas, it is still massively underused in transmission electron microscopy. To address this, a convolutional neural network model was developed for reliable classification of crystal structures from small numbers of electron i...

Descripción completa

Detalles Bibliográficos
Autores principales: Aguiar, J. A., Gong, M. L., Unocic, R. R., Tasdizen, T., Miller, B. D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Association for the Advancement of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6957330/
https://www.ncbi.nlm.nih.gov/pubmed/31976364
http://dx.doi.org/10.1126/sciadv.aaw1949
_version_ 1783487294456463360
author Aguiar, J. A.
Gong, M. L.
Unocic, R. R.
Tasdizen, T.
Miller, B. D.
author_facet Aguiar, J. A.
Gong, M. L.
Unocic, R. R.
Tasdizen, T.
Miller, B. D.
author_sort Aguiar, J. A.
collection PubMed
description While machine learning has been making enormous strides in many technical areas, it is still massively underused in transmission electron microscopy. To address this, a convolutional neural network model was developed for reliable classification of crystal structures from small numbers of electron images and diffraction patterns with no preferred orientation. Diffraction data containing 571,340 individual crystals divided among seven families, 32 genera, and 230 space groups were used to train the network. Despite the highly imbalanced dataset, the network narrows down the space groups to the top two with over 70% confidence in the worst case and up to 95% in the common cases. As examples, we benchmarked against alloys to two-dimensional materials to cross-validate our deep-learning model against high-resolution transmission electron images and diffraction patterns. We present this result both as a research tool and deep-learning application for diffraction analysis.
format Online
Article
Text
id pubmed-6957330
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher American Association for the Advancement of Science
record_format MEDLINE/PubMed
spelling pubmed-69573302020-01-23 Decoding crystallography from high-resolution electron imaging and diffraction datasets with deep learning Aguiar, J. A. Gong, M. L. Unocic, R. R. Tasdizen, T. Miller, B. D. Sci Adv Research Articles While machine learning has been making enormous strides in many technical areas, it is still massively underused in transmission electron microscopy. To address this, a convolutional neural network model was developed for reliable classification of crystal structures from small numbers of electron images and diffraction patterns with no preferred orientation. Diffraction data containing 571,340 individual crystals divided among seven families, 32 genera, and 230 space groups were used to train the network. Despite the highly imbalanced dataset, the network narrows down the space groups to the top two with over 70% confidence in the worst case and up to 95% in the common cases. As examples, we benchmarked against alloys to two-dimensional materials to cross-validate our deep-learning model against high-resolution transmission electron images and diffraction patterns. We present this result both as a research tool and deep-learning application for diffraction analysis. American Association for the Advancement of Science 2019-10-30 /pmc/articles/PMC6957330/ /pubmed/31976364 http://dx.doi.org/10.1126/sciadv.aaw1949 Text en Copyright © 2019 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC). http://creativecommons.org/licenses/by-nc/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution-NonCommercial license (http://creativecommons.org/licenses/by-nc/4.0/) , which permits use, distribution, and reproduction in any medium, so long as the resultant use is not for commercial advantage and provided the original work is properly cited.
spellingShingle Research Articles
Aguiar, J. A.
Gong, M. L.
Unocic, R. R.
Tasdizen, T.
Miller, B. D.
Decoding crystallography from high-resolution electron imaging and diffraction datasets with deep learning
title Decoding crystallography from high-resolution electron imaging and diffraction datasets with deep learning
title_full Decoding crystallography from high-resolution electron imaging and diffraction datasets with deep learning
title_fullStr Decoding crystallography from high-resolution electron imaging and diffraction datasets with deep learning
title_full_unstemmed Decoding crystallography from high-resolution electron imaging and diffraction datasets with deep learning
title_short Decoding crystallography from high-resolution electron imaging and diffraction datasets with deep learning
title_sort decoding crystallography from high-resolution electron imaging and diffraction datasets with deep learning
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6957330/
https://www.ncbi.nlm.nih.gov/pubmed/31976364
http://dx.doi.org/10.1126/sciadv.aaw1949
work_keys_str_mv AT aguiarja decodingcrystallographyfromhighresolutionelectronimaginganddiffractiondatasetswithdeeplearning
AT gongml decodingcrystallographyfromhighresolutionelectronimaginganddiffractiondatasetswithdeeplearning
AT unocicrr decodingcrystallographyfromhighresolutionelectronimaginganddiffractiondatasetswithdeeplearning
AT tasdizent decodingcrystallographyfromhighresolutionelectronimaginganddiffractiondatasetswithdeeplearning
AT millerbd decodingcrystallographyfromhighresolutionelectronimaginganddiffractiondatasetswithdeeplearning