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Decoding crystallography from high-resolution electron imaging and diffraction datasets with deep learning
While machine learning has been making enormous strides in many technical areas, it is still massively underused in transmission electron microscopy. To address this, a convolutional neural network model was developed for reliable classification of crystal structures from small numbers of electron i...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Association for the Advancement of Science
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6957330/ https://www.ncbi.nlm.nih.gov/pubmed/31976364 http://dx.doi.org/10.1126/sciadv.aaw1949 |
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author | Aguiar, J. A. Gong, M. L. Unocic, R. R. Tasdizen, T. Miller, B. D. |
author_facet | Aguiar, J. A. Gong, M. L. Unocic, R. R. Tasdizen, T. Miller, B. D. |
author_sort | Aguiar, J. A. |
collection | PubMed |
description | While machine learning has been making enormous strides in many technical areas, it is still massively underused in transmission electron microscopy. To address this, a convolutional neural network model was developed for reliable classification of crystal structures from small numbers of electron images and diffraction patterns with no preferred orientation. Diffraction data containing 571,340 individual crystals divided among seven families, 32 genera, and 230 space groups were used to train the network. Despite the highly imbalanced dataset, the network narrows down the space groups to the top two with over 70% confidence in the worst case and up to 95% in the common cases. As examples, we benchmarked against alloys to two-dimensional materials to cross-validate our deep-learning model against high-resolution transmission electron images and diffraction patterns. We present this result both as a research tool and deep-learning application for diffraction analysis. |
format | Online Article Text |
id | pubmed-6957330 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | American Association for the Advancement of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-69573302020-01-23 Decoding crystallography from high-resolution electron imaging and diffraction datasets with deep learning Aguiar, J. A. Gong, M. L. Unocic, R. R. Tasdizen, T. Miller, B. D. Sci Adv Research Articles While machine learning has been making enormous strides in many technical areas, it is still massively underused in transmission electron microscopy. To address this, a convolutional neural network model was developed for reliable classification of crystal structures from small numbers of electron images and diffraction patterns with no preferred orientation. Diffraction data containing 571,340 individual crystals divided among seven families, 32 genera, and 230 space groups were used to train the network. Despite the highly imbalanced dataset, the network narrows down the space groups to the top two with over 70% confidence in the worst case and up to 95% in the common cases. As examples, we benchmarked against alloys to two-dimensional materials to cross-validate our deep-learning model against high-resolution transmission electron images and diffraction patterns. We present this result both as a research tool and deep-learning application for diffraction analysis. American Association for the Advancement of Science 2019-10-30 /pmc/articles/PMC6957330/ /pubmed/31976364 http://dx.doi.org/10.1126/sciadv.aaw1949 Text en Copyright © 2019 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC). http://creativecommons.org/licenses/by-nc/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution-NonCommercial license (http://creativecommons.org/licenses/by-nc/4.0/) , which permits use, distribution, and reproduction in any medium, so long as the resultant use is not for commercial advantage and provided the original work is properly cited. |
spellingShingle | Research Articles Aguiar, J. A. Gong, M. L. Unocic, R. R. Tasdizen, T. Miller, B. D. Decoding crystallography from high-resolution electron imaging and diffraction datasets with deep learning |
title | Decoding crystallography from high-resolution electron imaging and diffraction datasets with deep learning |
title_full | Decoding crystallography from high-resolution electron imaging and diffraction datasets with deep learning |
title_fullStr | Decoding crystallography from high-resolution electron imaging and diffraction datasets with deep learning |
title_full_unstemmed | Decoding crystallography from high-resolution electron imaging and diffraction datasets with deep learning |
title_short | Decoding crystallography from high-resolution electron imaging and diffraction datasets with deep learning |
title_sort | decoding crystallography from high-resolution electron imaging and diffraction datasets with deep learning |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6957330/ https://www.ncbi.nlm.nih.gov/pubmed/31976364 http://dx.doi.org/10.1126/sciadv.aaw1949 |
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