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Transcriptome profiling of abiotic responses to heat, cold, salt, and osmotic stress of Capsicum annuum L.

Peppers (Capsicum annuum L.), belonging to the Solanaceae family, are one of the most economically important crops globally. Like other crops, peppers are threatened by diverse environmental conditions due to different pathogens and abiotic stresses. High-quality reference genomes with massive datas...

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Autores principales: Kang, Won-Hee, Sim, Young Mi, Koo, Namjin, Nam, Jae-Young, Lee, Junesung, Kim, Nayoung, Jang, Hakgi, Kim, Yong-Min, Yeom, Seon-In
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6957515/
https://www.ncbi.nlm.nih.gov/pubmed/31932587
http://dx.doi.org/10.1038/s41597-020-0352-7
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author Kang, Won-Hee
Sim, Young Mi
Koo, Namjin
Nam, Jae-Young
Lee, Junesung
Kim, Nayoung
Jang, Hakgi
Kim, Yong-Min
Yeom, Seon-In
author_facet Kang, Won-Hee
Sim, Young Mi
Koo, Namjin
Nam, Jae-Young
Lee, Junesung
Kim, Nayoung
Jang, Hakgi
Kim, Yong-Min
Yeom, Seon-In
author_sort Kang, Won-Hee
collection PubMed
description Peppers (Capsicum annuum L.), belonging to the Solanaceae family, are one of the most economically important crops globally. Like other crops, peppers are threatened by diverse environmental conditions due to different pathogens and abiotic stresses. High-quality reference genomes with massive datasets of transcriptomes from various conditions can provide clues to preferred agronomic traits for breeding. However, few global gene expression profiling datasets have been published to examine the environmental stress-resistant mechanisms in peppers. In this study, we report the RNA-seq analyses of peppers treated with heat, cold, salinity, and osmotic stress at six different time points. RNA-seq libraries from 78 RNA samples containing three biological replicates per time point for each of the abiotic stresses and a mock control were constructed. A total of 204.68 Gb of transcriptome data were verified by differentially expressed genes and gene ontology enrichment analysis. Analyses of the transcriptome data in this study will provide useful information for basic studies of various stimuli to facilitate the development of stress-resistant pepper cultivars.
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spelling pubmed-69575152020-01-22 Transcriptome profiling of abiotic responses to heat, cold, salt, and osmotic stress of Capsicum annuum L. Kang, Won-Hee Sim, Young Mi Koo, Namjin Nam, Jae-Young Lee, Junesung Kim, Nayoung Jang, Hakgi Kim, Yong-Min Yeom, Seon-In Sci Data Data Descriptor Peppers (Capsicum annuum L.), belonging to the Solanaceae family, are one of the most economically important crops globally. Like other crops, peppers are threatened by diverse environmental conditions due to different pathogens and abiotic stresses. High-quality reference genomes with massive datasets of transcriptomes from various conditions can provide clues to preferred agronomic traits for breeding. However, few global gene expression profiling datasets have been published to examine the environmental stress-resistant mechanisms in peppers. In this study, we report the RNA-seq analyses of peppers treated with heat, cold, salinity, and osmotic stress at six different time points. RNA-seq libraries from 78 RNA samples containing three biological replicates per time point for each of the abiotic stresses and a mock control were constructed. A total of 204.68 Gb of transcriptome data were verified by differentially expressed genes and gene ontology enrichment analysis. Analyses of the transcriptome data in this study will provide useful information for basic studies of various stimuli to facilitate the development of stress-resistant pepper cultivars. Nature Publishing Group UK 2020-01-13 /pmc/articles/PMC6957515/ /pubmed/31932587 http://dx.doi.org/10.1038/s41597-020-0352-7 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files associated with this article.
spellingShingle Data Descriptor
Kang, Won-Hee
Sim, Young Mi
Koo, Namjin
Nam, Jae-Young
Lee, Junesung
Kim, Nayoung
Jang, Hakgi
Kim, Yong-Min
Yeom, Seon-In
Transcriptome profiling of abiotic responses to heat, cold, salt, and osmotic stress of Capsicum annuum L.
title Transcriptome profiling of abiotic responses to heat, cold, salt, and osmotic stress of Capsicum annuum L.
title_full Transcriptome profiling of abiotic responses to heat, cold, salt, and osmotic stress of Capsicum annuum L.
title_fullStr Transcriptome profiling of abiotic responses to heat, cold, salt, and osmotic stress of Capsicum annuum L.
title_full_unstemmed Transcriptome profiling of abiotic responses to heat, cold, salt, and osmotic stress of Capsicum annuum L.
title_short Transcriptome profiling of abiotic responses to heat, cold, salt, and osmotic stress of Capsicum annuum L.
title_sort transcriptome profiling of abiotic responses to heat, cold, salt, and osmotic stress of capsicum annuum l.
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6957515/
https://www.ncbi.nlm.nih.gov/pubmed/31932587
http://dx.doi.org/10.1038/s41597-020-0352-7
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