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Exploring the Novel Susceptibility Gene Variants for Primary Open-Angle Glaucoma in East Asian Cohorts: The GLAU-GENDISK Study
Primary open-angle glaucoma (POAG) can develop even within normal ranges of intraocular pressure, and this type of glaucoma (so-called ‘normal-tension glaucoma [NTG]’) is highly prevalent in East Asia including Korea and Japan. We conducted exome chip analysis to identify low-frequency and rare vari...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6959350/ https://www.ncbi.nlm.nih.gov/pubmed/31937794 http://dx.doi.org/10.1038/s41598-019-57066-7 |
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author | Kim, Yong Woo Kim, Yu Jeong Cheong, Hyun Sub Shiga, Yukihiro Hashimoto, Kazuki Song, Yong Ju Kim, Seok Hwan Choi, Hyuk Jin Nishiguchi, Koji M. Kawai, Yosuke Nagasaki, Masao Nakazawa, Toru Park, Ki Ho Kim, Dong Myung Jeoung, Jin Wook |
author_facet | Kim, Yong Woo Kim, Yu Jeong Cheong, Hyun Sub Shiga, Yukihiro Hashimoto, Kazuki Song, Yong Ju Kim, Seok Hwan Choi, Hyuk Jin Nishiguchi, Koji M. Kawai, Yosuke Nagasaki, Masao Nakazawa, Toru Park, Ki Ho Kim, Dong Myung Jeoung, Jin Wook |
author_sort | Kim, Yong Woo |
collection | PubMed |
description | Primary open-angle glaucoma (POAG) can develop even within normal ranges of intraocular pressure, and this type of glaucoma (so-called ‘normal-tension glaucoma [NTG]’) is highly prevalent in East Asia including Korea and Japan. We conducted exome chip analysis to identify low-frequency and rare variants associated with POAG from the primary cohort (309 POAG patients and 5,400 control, all Koreans). For replication, Korean (310 POAG patients and 5,612 controls) and Japanese (565 POAG patients and 1,104 controls) cohorts were further investigated by targeted genotyping. SNP rs116121322 in LRRC27 showed nominally significant association with POAG in the discovery cohort (OR = 29.85, P = 2E–06). This SNP was validated in the Korean replication cohort but only in the NTG subgroups (OR = 9.86, P = 0.007). Japanese replication cohort did not show significant association with POAG (P .00.44). However, the meta-analysis in the entire cohort revealed significant association of rs116121322 with POAG (OR(combined) = 10.28, P(combined) = 1.4E–07). The LRRC27 protein expression was confirmed from human trabecular meshwork cells. For gene-based testing, METTL20 showed a significant association in POAG (P(combined) = 0.002) and in the subgroup of NTG (P(combined) = 0.02), whereas ZNF677 were significantly associated with only in the subgroup of high-tension glaucoma (P(combined) = 1.5E–06). Our findings may provide further genetic backgrounds into the pathogenesis of POAG, especially for the patients who have lower baseline intraocular pressures. |
format | Online Article Text |
id | pubmed-6959350 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-69593502020-01-17 Exploring the Novel Susceptibility Gene Variants for Primary Open-Angle Glaucoma in East Asian Cohorts: The GLAU-GENDISK Study Kim, Yong Woo Kim, Yu Jeong Cheong, Hyun Sub Shiga, Yukihiro Hashimoto, Kazuki Song, Yong Ju Kim, Seok Hwan Choi, Hyuk Jin Nishiguchi, Koji M. Kawai, Yosuke Nagasaki, Masao Nakazawa, Toru Park, Ki Ho Kim, Dong Myung Jeoung, Jin Wook Sci Rep Article Primary open-angle glaucoma (POAG) can develop even within normal ranges of intraocular pressure, and this type of glaucoma (so-called ‘normal-tension glaucoma [NTG]’) is highly prevalent in East Asia including Korea and Japan. We conducted exome chip analysis to identify low-frequency and rare variants associated with POAG from the primary cohort (309 POAG patients and 5,400 control, all Koreans). For replication, Korean (310 POAG patients and 5,612 controls) and Japanese (565 POAG patients and 1,104 controls) cohorts were further investigated by targeted genotyping. SNP rs116121322 in LRRC27 showed nominally significant association with POAG in the discovery cohort (OR = 29.85, P = 2E–06). This SNP was validated in the Korean replication cohort but only in the NTG subgroups (OR = 9.86, P = 0.007). Japanese replication cohort did not show significant association with POAG (P .00.44). However, the meta-analysis in the entire cohort revealed significant association of rs116121322 with POAG (OR(combined) = 10.28, P(combined) = 1.4E–07). The LRRC27 protein expression was confirmed from human trabecular meshwork cells. For gene-based testing, METTL20 showed a significant association in POAG (P(combined) = 0.002) and in the subgroup of NTG (P(combined) = 0.02), whereas ZNF677 were significantly associated with only in the subgroup of high-tension glaucoma (P(combined) = 1.5E–06). Our findings may provide further genetic backgrounds into the pathogenesis of POAG, especially for the patients who have lower baseline intraocular pressures. Nature Publishing Group UK 2020-01-14 /pmc/articles/PMC6959350/ /pubmed/31937794 http://dx.doi.org/10.1038/s41598-019-57066-7 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Kim, Yong Woo Kim, Yu Jeong Cheong, Hyun Sub Shiga, Yukihiro Hashimoto, Kazuki Song, Yong Ju Kim, Seok Hwan Choi, Hyuk Jin Nishiguchi, Koji M. Kawai, Yosuke Nagasaki, Masao Nakazawa, Toru Park, Ki Ho Kim, Dong Myung Jeoung, Jin Wook Exploring the Novel Susceptibility Gene Variants for Primary Open-Angle Glaucoma in East Asian Cohorts: The GLAU-GENDISK Study |
title | Exploring the Novel Susceptibility Gene Variants for Primary Open-Angle Glaucoma in East Asian Cohorts: The GLAU-GENDISK Study |
title_full | Exploring the Novel Susceptibility Gene Variants for Primary Open-Angle Glaucoma in East Asian Cohorts: The GLAU-GENDISK Study |
title_fullStr | Exploring the Novel Susceptibility Gene Variants for Primary Open-Angle Glaucoma in East Asian Cohorts: The GLAU-GENDISK Study |
title_full_unstemmed | Exploring the Novel Susceptibility Gene Variants for Primary Open-Angle Glaucoma in East Asian Cohorts: The GLAU-GENDISK Study |
title_short | Exploring the Novel Susceptibility Gene Variants for Primary Open-Angle Glaucoma in East Asian Cohorts: The GLAU-GENDISK Study |
title_sort | exploring the novel susceptibility gene variants for primary open-angle glaucoma in east asian cohorts: the glau-gendisk study |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6959350/ https://www.ncbi.nlm.nih.gov/pubmed/31937794 http://dx.doi.org/10.1038/s41598-019-57066-7 |
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