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Oxidative Stress-Related Gene Polymorphisms Are Associated With Hepatitis B Virus-Induced Liver Disease in the Northern Chinese Han Population
Oxidative stress is closely related to the occurrence and development of various diseases such as cancer, diabetes, and cardiovascular and infectious diseases. We identified six critical genetic variants related to oxidative stress, and evaluated their main effects and their interaction effects on h...
Autores principales: | , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6960262/ https://www.ncbi.nlm.nih.gov/pubmed/31969899 http://dx.doi.org/10.3389/fgene.2019.01290 |
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author | Ma, Ning Liu, Wenxuan Zhang, Xiaolin Gao, Xia Yu, Fengxue Guo, Weiheng Meng, Yanxin Gao, Ping Zhou, Jin Yuan, Meina Mi, Yingjun Zhang, Lei Qi, Sufen Li, Lu Wang, Luyao Su, Qiao Yang, Lei Liu, Dianwu |
author_facet | Ma, Ning Liu, Wenxuan Zhang, Xiaolin Gao, Xia Yu, Fengxue Guo, Weiheng Meng, Yanxin Gao, Ping Zhou, Jin Yuan, Meina Mi, Yingjun Zhang, Lei Qi, Sufen Li, Lu Wang, Luyao Su, Qiao Yang, Lei Liu, Dianwu |
author_sort | Ma, Ning |
collection | PubMed |
description | Oxidative stress is closely related to the occurrence and development of various diseases such as cancer, diabetes, and cardiovascular and infectious diseases. We identified six critical genetic variants related to oxidative stress, and evaluated their main effects and their interaction effects on hepatitis B virus (HBV)-induced liver diseases. We enrolled 3,128 Han Chinese subjects into five groups: healthy controls, chronic hepatitis B (CHB), liver cirrhosis (LC), hepatocellular carcinoma (HCC), and natural clearance. We then determined the genotypes in each group for CYBA-rs4673, NCF4-rs1883112, NOX4-rs1836882, rs3017887, SOD2-rs4880, and GCLM-rs41303970, and evaluated the association between these variants and HBV-induced liver diseases. Gene-gene interactions were evaluated using generalized multifactor dimensionality reduction, logistic regression, and four-by-two tables. Significant associations were observed between healthy controls and the CIB group (CHB+LC+HCC). The CYBA-rs4673AG genotype was associated with a 1.356 rate of susceptibility of HBV-induced liver disease compared to the wild type GG genotype. The NCF4-rs1883112G allele occurred more frequently in healthy controls than in the CIB group in all three models (dominant, codominant, and recessive). Nox4-rs1836882 TC showed a protective association, being more frequent in healthy controls compared to the wild type TT genotype. GCLM-rs41303970A was associated with HBV-induced liver disease. The overall best model by multifactor dimensionality reduction was a five factor interaction model that had the highest cross validation consistency (10/10) and test accuracy (0.5669), P = 0.001. Oxidative stress-related gene polymorphisms are likely to be associated with HBV-induced liver disease, suggesting that information on these variations is useful for risk assessment of HBV-induced liver disease. |
format | Online Article Text |
id | pubmed-6960262 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-69602622020-01-22 Oxidative Stress-Related Gene Polymorphisms Are Associated With Hepatitis B Virus-Induced Liver Disease in the Northern Chinese Han Population Ma, Ning Liu, Wenxuan Zhang, Xiaolin Gao, Xia Yu, Fengxue Guo, Weiheng Meng, Yanxin Gao, Ping Zhou, Jin Yuan, Meina Mi, Yingjun Zhang, Lei Qi, Sufen Li, Lu Wang, Luyao Su, Qiao Yang, Lei Liu, Dianwu Front Genet Genetics Oxidative stress is closely related to the occurrence and development of various diseases such as cancer, diabetes, and cardiovascular and infectious diseases. We identified six critical genetic variants related to oxidative stress, and evaluated their main effects and their interaction effects on hepatitis B virus (HBV)-induced liver diseases. We enrolled 3,128 Han Chinese subjects into five groups: healthy controls, chronic hepatitis B (CHB), liver cirrhosis (LC), hepatocellular carcinoma (HCC), and natural clearance. We then determined the genotypes in each group for CYBA-rs4673, NCF4-rs1883112, NOX4-rs1836882, rs3017887, SOD2-rs4880, and GCLM-rs41303970, and evaluated the association between these variants and HBV-induced liver diseases. Gene-gene interactions were evaluated using generalized multifactor dimensionality reduction, logistic regression, and four-by-two tables. Significant associations were observed between healthy controls and the CIB group (CHB+LC+HCC). The CYBA-rs4673AG genotype was associated with a 1.356 rate of susceptibility of HBV-induced liver disease compared to the wild type GG genotype. The NCF4-rs1883112G allele occurred more frequently in healthy controls than in the CIB group in all three models (dominant, codominant, and recessive). Nox4-rs1836882 TC showed a protective association, being more frequent in healthy controls compared to the wild type TT genotype. GCLM-rs41303970A was associated with HBV-induced liver disease. The overall best model by multifactor dimensionality reduction was a five factor interaction model that had the highest cross validation consistency (10/10) and test accuracy (0.5669), P = 0.001. Oxidative stress-related gene polymorphisms are likely to be associated with HBV-induced liver disease, suggesting that information on these variations is useful for risk assessment of HBV-induced liver disease. Frontiers Media S.A. 2020-01-08 /pmc/articles/PMC6960262/ /pubmed/31969899 http://dx.doi.org/10.3389/fgene.2019.01290 Text en Copyright © 2020 Ma, Liu, Zhang, Gao, Yu, Guo, Meng, Gao, Zhou, Yuan, Mi, Zhang, Qi, Li, Wang, Su, Yang and Liu http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Ma, Ning Liu, Wenxuan Zhang, Xiaolin Gao, Xia Yu, Fengxue Guo, Weiheng Meng, Yanxin Gao, Ping Zhou, Jin Yuan, Meina Mi, Yingjun Zhang, Lei Qi, Sufen Li, Lu Wang, Luyao Su, Qiao Yang, Lei Liu, Dianwu Oxidative Stress-Related Gene Polymorphisms Are Associated With Hepatitis B Virus-Induced Liver Disease in the Northern Chinese Han Population |
title | Oxidative Stress-Related Gene Polymorphisms Are Associated With Hepatitis B Virus-Induced Liver Disease in the Northern Chinese Han Population |
title_full | Oxidative Stress-Related Gene Polymorphisms Are Associated With Hepatitis B Virus-Induced Liver Disease in the Northern Chinese Han Population |
title_fullStr | Oxidative Stress-Related Gene Polymorphisms Are Associated With Hepatitis B Virus-Induced Liver Disease in the Northern Chinese Han Population |
title_full_unstemmed | Oxidative Stress-Related Gene Polymorphisms Are Associated With Hepatitis B Virus-Induced Liver Disease in the Northern Chinese Han Population |
title_short | Oxidative Stress-Related Gene Polymorphisms Are Associated With Hepatitis B Virus-Induced Liver Disease in the Northern Chinese Han Population |
title_sort | oxidative stress-related gene polymorphisms are associated with hepatitis b virus-induced liver disease in the northern chinese han population |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6960262/ https://www.ncbi.nlm.nih.gov/pubmed/31969899 http://dx.doi.org/10.3389/fgene.2019.01290 |
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