Cargando…
DENDRO: genetic heterogeneity profiling and subclone detection by single-cell RNA sequencing
Although scRNA-seq is now ubiquitously adopted in studies of intratumor heterogeneity, detection of somatic mutations and inference of clonal membership from scRNA-seq is currently unreliable. We propose DENDRO, an analysis method for scRNA-seq data that clusters single cells into genetically distin...
Autores principales: | Zhou, Zilu, Xu, Bihui, Minn, Andy, Zhang, Nancy R. |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6961311/ https://www.ncbi.nlm.nih.gov/pubmed/31937348 http://dx.doi.org/10.1186/s13059-019-1922-x |
Ejemplares similares
-
Biased estimates of clonal evolution and subclonal heterogeneity can arise from PCR duplicates in deep sequencing experiments
por: Smith, Erin N, et al.
Publicado: (2014) -
CAISC: A software to integrate copy number variations and single nucleotide mutations for genetic heterogeneity profiling and subclone detection by single-cell RNA sequencing
por: Kannan, Jeerthi, et al.
Publicado: (2022) -
Accurate Identification of Subclones in Tumor Genomes
por: Ahmadinejad, Navid, et al.
Publicado: (2022) -
PhyloWGS: Reconstructing subclonal composition and evolution from whole-genome sequencing of tumors
por: Deshwar, Amit G, et al.
Publicado: (2015) -
A general framework for analyzing tumor subclonality using SNP array and DNA sequencing data
por: Li, Bo, et al.
Publicado: (2014)