Cargando…

The treeness of the tree of historical trees of life

This paper compares and categorizes historical ideas about trees showing relationships among biological entities. The hierarchical structure of a tree is used to test the global consistency of similarities among these ideas; in other words we assess the “treeness” of the tree of historical trees. Th...

Descripción completa

Detalles Bibliográficos
Autores principales: Fisler, Marie, Crémière, Cédric, Darlu, Pierre, Lecointre, Guillaume
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6961905/
https://www.ncbi.nlm.nih.gov/pubmed/31940355
http://dx.doi.org/10.1371/journal.pone.0226567
_version_ 1783488068533092352
author Fisler, Marie
Crémière, Cédric
Darlu, Pierre
Lecointre, Guillaume
author_facet Fisler, Marie
Crémière, Cédric
Darlu, Pierre
Lecointre, Guillaume
author_sort Fisler, Marie
collection PubMed
description This paper compares and categorizes historical ideas about trees showing relationships among biological entities. The hierarchical structure of a tree is used to test the global consistency of similarities among these ideas; in other words we assess the “treeness” of the tree of historical trees. The collected data are figures and ideas about trees showing relationships among biological entities published or drawn by naturalists from 1555 to 2012. They are coded into a matrix of 235 historical trees and 141 descriptive attributes. From the most parsimonious “tree” of historical trees, treeness is measured by consistency index, retention index and homoplasy excess ratio. This tree is used to create sets or categories of trees, or to study the circulation of ideas. From an unrooted network of historical trees, treeness is measured by the delta-score. This unrooted network is used to measure and visualize treeness. The two approaches show a rather good treeness of the data, with respectively a retention idex of 0.83 and homoplasy excess ratio of 0.74, on one hand, and a delta-score of 0.26 on the other hand. It is interpreted as due to vertical transmission, i.e. an inheritance of shared ideas about biological trees among authors. This tree of trees is then used to test categories previously made. For instance, cladists and gradists are « paraphyletic ». The branches of this tree of trees suggest new categories of tree-thinkers that could have been overlooked by historians or systematists.
format Online
Article
Text
id pubmed-6961905
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-69619052020-01-26 The treeness of the tree of historical trees of life Fisler, Marie Crémière, Cédric Darlu, Pierre Lecointre, Guillaume PLoS One Research Article This paper compares and categorizes historical ideas about trees showing relationships among biological entities. The hierarchical structure of a tree is used to test the global consistency of similarities among these ideas; in other words we assess the “treeness” of the tree of historical trees. The collected data are figures and ideas about trees showing relationships among biological entities published or drawn by naturalists from 1555 to 2012. They are coded into a matrix of 235 historical trees and 141 descriptive attributes. From the most parsimonious “tree” of historical trees, treeness is measured by consistency index, retention index and homoplasy excess ratio. This tree is used to create sets or categories of trees, or to study the circulation of ideas. From an unrooted network of historical trees, treeness is measured by the delta-score. This unrooted network is used to measure and visualize treeness. The two approaches show a rather good treeness of the data, with respectively a retention idex of 0.83 and homoplasy excess ratio of 0.74, on one hand, and a delta-score of 0.26 on the other hand. It is interpreted as due to vertical transmission, i.e. an inheritance of shared ideas about biological trees among authors. This tree of trees is then used to test categories previously made. For instance, cladists and gradists are « paraphyletic ». The branches of this tree of trees suggest new categories of tree-thinkers that could have been overlooked by historians or systematists. Public Library of Science 2020-01-15 /pmc/articles/PMC6961905/ /pubmed/31940355 http://dx.doi.org/10.1371/journal.pone.0226567 Text en © 2020 Fisler et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Fisler, Marie
Crémière, Cédric
Darlu, Pierre
Lecointre, Guillaume
The treeness of the tree of historical trees of life
title The treeness of the tree of historical trees of life
title_full The treeness of the tree of historical trees of life
title_fullStr The treeness of the tree of historical trees of life
title_full_unstemmed The treeness of the tree of historical trees of life
title_short The treeness of the tree of historical trees of life
title_sort treeness of the tree of historical trees of life
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6961905/
https://www.ncbi.nlm.nih.gov/pubmed/31940355
http://dx.doi.org/10.1371/journal.pone.0226567
work_keys_str_mv AT fislermarie thetreenessofthetreeofhistoricaltreesoflife
AT cremierecedric thetreenessofthetreeofhistoricaltreesoflife
AT darlupierre thetreenessofthetreeofhistoricaltreesoflife
AT lecointreguillaume thetreenessofthetreeofhistoricaltreesoflife
AT fislermarie treenessofthetreeofhistoricaltreesoflife
AT cremierecedric treenessofthetreeofhistoricaltreesoflife
AT darlupierre treenessofthetreeofhistoricaltreesoflife
AT lecointreguillaume treenessofthetreeofhistoricaltreesoflife