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Automated Sample Storage in Biobanking to Enhance Translational Research: The Bumpy Road to Implementation

The low reproducibility of biomarker research is a major holdback for the translation of research results to the bedside. Sample integrity has been identified as a key factor that contributes to improved reproducibility. The key mission of biobanks is to ensure that all activities and materials are...

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Autores principales: Linsen, Loes, Van Landuyt, Kristel, Ectors, Nadine
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6962113/
https://www.ncbi.nlm.nih.gov/pubmed/31998730
http://dx.doi.org/10.3389/fmed.2019.00309
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author Linsen, Loes
Van Landuyt, Kristel
Ectors, Nadine
author_facet Linsen, Loes
Van Landuyt, Kristel
Ectors, Nadine
author_sort Linsen, Loes
collection PubMed
description The low reproducibility of biomarker research is a major holdback for the translation of research results to the bedside. Sample integrity has been identified as a key factor that contributes to improved reproducibility. The key mission of biobanks is to ensure that all activities and materials are managed according to standardized procedures and best practices to ensure and preserve sample integrity. When handling large numbers of biospecimens automation of sample handling and storage is often the method of choice to maintain and improve sample integrity. In December 2013, the centralized Biobank of the University Hospitals and the Catholic University of Leuven (UZ KU Leuven) decided to implement automated systems for sample storage and retrieval, one for storage at −20°C and one for storage at −80°C. Here we describe the extensive process of installation, acceptance, validation, and implementation of these two systems. Overall it took about 4 years to effectively take the systems into production. Multiple issues resulted in the delayed implementation, with labware change, quality of the initial installation, and misunderstanding of biobank concerns being the most impacting. Significant effort in terms of time and resources from both the automated store supplier as well as the biobank itself was needed to achieve a successful implementation. Within 15 months of actual integration in the biobank workflow, over 63 k samples were placed into the systems. Actual hands-on sample handling and retrieval times were substantially reduced, although this implied the shift of dedicated personnel time from the researchers' laboratories to the biobank. With the successful implementation of automated frozen sample storage systems, the centralized UZ KU Leuven Biobank is now also able to efficiently support large-scale translational research.
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spelling pubmed-69621132020-01-29 Automated Sample Storage in Biobanking to Enhance Translational Research: The Bumpy Road to Implementation Linsen, Loes Van Landuyt, Kristel Ectors, Nadine Front Med (Lausanne) Medicine The low reproducibility of biomarker research is a major holdback for the translation of research results to the bedside. Sample integrity has been identified as a key factor that contributes to improved reproducibility. The key mission of biobanks is to ensure that all activities and materials are managed according to standardized procedures and best practices to ensure and preserve sample integrity. When handling large numbers of biospecimens automation of sample handling and storage is often the method of choice to maintain and improve sample integrity. In December 2013, the centralized Biobank of the University Hospitals and the Catholic University of Leuven (UZ KU Leuven) decided to implement automated systems for sample storage and retrieval, one for storage at −20°C and one for storage at −80°C. Here we describe the extensive process of installation, acceptance, validation, and implementation of these two systems. Overall it took about 4 years to effectively take the systems into production. Multiple issues resulted in the delayed implementation, with labware change, quality of the initial installation, and misunderstanding of biobank concerns being the most impacting. Significant effort in terms of time and resources from both the automated store supplier as well as the biobank itself was needed to achieve a successful implementation. Within 15 months of actual integration in the biobank workflow, over 63 k samples were placed into the systems. Actual hands-on sample handling and retrieval times were substantially reduced, although this implied the shift of dedicated personnel time from the researchers' laboratories to the biobank. With the successful implementation of automated frozen sample storage systems, the centralized UZ KU Leuven Biobank is now also able to efficiently support large-scale translational research. Frontiers Media S.A. 2020-01-09 /pmc/articles/PMC6962113/ /pubmed/31998730 http://dx.doi.org/10.3389/fmed.2019.00309 Text en Copyright © 2020 Linsen, Van Landuyt and Ectors. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Medicine
Linsen, Loes
Van Landuyt, Kristel
Ectors, Nadine
Automated Sample Storage in Biobanking to Enhance Translational Research: The Bumpy Road to Implementation
title Automated Sample Storage in Biobanking to Enhance Translational Research: The Bumpy Road to Implementation
title_full Automated Sample Storage in Biobanking to Enhance Translational Research: The Bumpy Road to Implementation
title_fullStr Automated Sample Storage in Biobanking to Enhance Translational Research: The Bumpy Road to Implementation
title_full_unstemmed Automated Sample Storage in Biobanking to Enhance Translational Research: The Bumpy Road to Implementation
title_short Automated Sample Storage in Biobanking to Enhance Translational Research: The Bumpy Road to Implementation
title_sort automated sample storage in biobanking to enhance translational research: the bumpy road to implementation
topic Medicine
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6962113/
https://www.ncbi.nlm.nih.gov/pubmed/31998730
http://dx.doi.org/10.3389/fmed.2019.00309
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