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A Multi-Task Representation Learning Architecture for Enhanced Graph Classification

Composed of nodes and edges, graph structured data are organized in the non-Euclidean geometric space and ubiquitous especially in chemical compounds, proteins, etc. They usually contain rich structure information, and how to effectively extract inherent features of them is of great significance on...

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Autores principales: Xie, Yu, Gong, Maoguo, Gao, Yuan, Qin, A. K., Fan, Xiaolong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6962136/
https://www.ncbi.nlm.nih.gov/pubmed/31998065
http://dx.doi.org/10.3389/fnins.2019.01395
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author Xie, Yu
Gong, Maoguo
Gao, Yuan
Qin, A. K.
Fan, Xiaolong
author_facet Xie, Yu
Gong, Maoguo
Gao, Yuan
Qin, A. K.
Fan, Xiaolong
author_sort Xie, Yu
collection PubMed
description Composed of nodes and edges, graph structured data are organized in the non-Euclidean geometric space and ubiquitous especially in chemical compounds, proteins, etc. They usually contain rich structure information, and how to effectively extract inherent features of them is of great significance on the determination of function or traits in medicine and biology. Recently, there is a growing interest in learning graph-level representations for graph classification. Existing graph classification strategies based on graph neural networks broadly follow a single-task learning framework and manage to learn graph-level representations through aggregating node-level representations. However, they lack the efficient utilization of labels of nodes in a graph. In this paper, we propose a novel multi-task representation learning architecture coupled with the task of supervised node classification for enhanced graph classification. Specifically, the node classification task enforces node-level representations to take full advantage of node labels available in the graph and the graph classification task allows for learning graph-level representations in an end-to-end manner. Experimental results on multiple benchmark datasets demonstrate that the proposed architecture performs significantly better than various single-task graph neural network methods for graph classification.
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spelling pubmed-69621362020-01-29 A Multi-Task Representation Learning Architecture for Enhanced Graph Classification Xie, Yu Gong, Maoguo Gao, Yuan Qin, A. K. Fan, Xiaolong Front Neurosci Neuroscience Composed of nodes and edges, graph structured data are organized in the non-Euclidean geometric space and ubiquitous especially in chemical compounds, proteins, etc. They usually contain rich structure information, and how to effectively extract inherent features of them is of great significance on the determination of function or traits in medicine and biology. Recently, there is a growing interest in learning graph-level representations for graph classification. Existing graph classification strategies based on graph neural networks broadly follow a single-task learning framework and manage to learn graph-level representations through aggregating node-level representations. However, they lack the efficient utilization of labels of nodes in a graph. In this paper, we propose a novel multi-task representation learning architecture coupled with the task of supervised node classification for enhanced graph classification. Specifically, the node classification task enforces node-level representations to take full advantage of node labels available in the graph and the graph classification task allows for learning graph-level representations in an end-to-end manner. Experimental results on multiple benchmark datasets demonstrate that the proposed architecture performs significantly better than various single-task graph neural network methods for graph classification. Frontiers Media S.A. 2020-01-09 /pmc/articles/PMC6962136/ /pubmed/31998065 http://dx.doi.org/10.3389/fnins.2019.01395 Text en Copyright © 2020 Xie, Gong, Gao, Qin and Fan. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Xie, Yu
Gong, Maoguo
Gao, Yuan
Qin, A. K.
Fan, Xiaolong
A Multi-Task Representation Learning Architecture for Enhanced Graph Classification
title A Multi-Task Representation Learning Architecture for Enhanced Graph Classification
title_full A Multi-Task Representation Learning Architecture for Enhanced Graph Classification
title_fullStr A Multi-Task Representation Learning Architecture for Enhanced Graph Classification
title_full_unstemmed A Multi-Task Representation Learning Architecture for Enhanced Graph Classification
title_short A Multi-Task Representation Learning Architecture for Enhanced Graph Classification
title_sort multi-task representation learning architecture for enhanced graph classification
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6962136/
https://www.ncbi.nlm.nih.gov/pubmed/31998065
http://dx.doi.org/10.3389/fnins.2019.01395
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