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An efficient analytical reduction of detailed nonlinear neuron models
Detailed conductance-based nonlinear neuron models consisting of thousands of synapses are key for understanding of the computational properties of single neurons and large neuronal networks, and for interpreting experimental results. Simulations of these models are computationally expensive, consid...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6962154/ https://www.ncbi.nlm.nih.gov/pubmed/31941884 http://dx.doi.org/10.1038/s41467-019-13932-6 |
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author | Amsalem, Oren Eyal, Guy Rogozinski, Noa Gevaert, Michael Kumbhar, Pramod Schürmann, Felix Segev, Idan |
author_facet | Amsalem, Oren Eyal, Guy Rogozinski, Noa Gevaert, Michael Kumbhar, Pramod Schürmann, Felix Segev, Idan |
author_sort | Amsalem, Oren |
collection | PubMed |
description | Detailed conductance-based nonlinear neuron models consisting of thousands of synapses are key for understanding of the computational properties of single neurons and large neuronal networks, and for interpreting experimental results. Simulations of these models are computationally expensive, considerably curtailing their utility. Neuron_Reduce is a new analytical approach to reduce the morphological complexity and computational time of nonlinear neuron models. Synapses and active membrane channels are mapped to the reduced model preserving their transfer impedance to the soma; synapses with identical transfer impedance are merged into one NEURON process still retaining their individual activation times. Neuron_Reduce accelerates the simulations by 40–250 folds for a variety of cell types and realistic number (10,000–100,000) of synapses while closely replicating voltage dynamics and specific dendritic computations. The reduced neuron-models will enable realistic simulations of neural networks at unprecedented scale, including networks emerging from micro-connectomics efforts and biologically-inspired “deep networks”. Neuron_Reduce is publicly available and is straightforward to implement. |
format | Online Article Text |
id | pubmed-6962154 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-69621542020-01-17 An efficient analytical reduction of detailed nonlinear neuron models Amsalem, Oren Eyal, Guy Rogozinski, Noa Gevaert, Michael Kumbhar, Pramod Schürmann, Felix Segev, Idan Nat Commun Article Detailed conductance-based nonlinear neuron models consisting of thousands of synapses are key for understanding of the computational properties of single neurons and large neuronal networks, and for interpreting experimental results. Simulations of these models are computationally expensive, considerably curtailing their utility. Neuron_Reduce is a new analytical approach to reduce the morphological complexity and computational time of nonlinear neuron models. Synapses and active membrane channels are mapped to the reduced model preserving their transfer impedance to the soma; synapses with identical transfer impedance are merged into one NEURON process still retaining their individual activation times. Neuron_Reduce accelerates the simulations by 40–250 folds for a variety of cell types and realistic number (10,000–100,000) of synapses while closely replicating voltage dynamics and specific dendritic computations. The reduced neuron-models will enable realistic simulations of neural networks at unprecedented scale, including networks emerging from micro-connectomics efforts and biologically-inspired “deep networks”. Neuron_Reduce is publicly available and is straightforward to implement. Nature Publishing Group UK 2020-01-15 /pmc/articles/PMC6962154/ /pubmed/31941884 http://dx.doi.org/10.1038/s41467-019-13932-6 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Amsalem, Oren Eyal, Guy Rogozinski, Noa Gevaert, Michael Kumbhar, Pramod Schürmann, Felix Segev, Idan An efficient analytical reduction of detailed nonlinear neuron models |
title | An efficient analytical reduction of detailed nonlinear neuron models |
title_full | An efficient analytical reduction of detailed nonlinear neuron models |
title_fullStr | An efficient analytical reduction of detailed nonlinear neuron models |
title_full_unstemmed | An efficient analytical reduction of detailed nonlinear neuron models |
title_short | An efficient analytical reduction of detailed nonlinear neuron models |
title_sort | efficient analytical reduction of detailed nonlinear neuron models |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6962154/ https://www.ncbi.nlm.nih.gov/pubmed/31941884 http://dx.doi.org/10.1038/s41467-019-13932-6 |
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