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An efficient analytical reduction of detailed nonlinear neuron models

Detailed conductance-based nonlinear neuron models consisting of thousands of synapses are key for understanding of the computational properties of single neurons and large neuronal networks, and for interpreting experimental results. Simulations of these models are computationally expensive, consid...

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Autores principales: Amsalem, Oren, Eyal, Guy, Rogozinski, Noa, Gevaert, Michael, Kumbhar, Pramod, Schürmann, Felix, Segev, Idan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6962154/
https://www.ncbi.nlm.nih.gov/pubmed/31941884
http://dx.doi.org/10.1038/s41467-019-13932-6
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author Amsalem, Oren
Eyal, Guy
Rogozinski, Noa
Gevaert, Michael
Kumbhar, Pramod
Schürmann, Felix
Segev, Idan
author_facet Amsalem, Oren
Eyal, Guy
Rogozinski, Noa
Gevaert, Michael
Kumbhar, Pramod
Schürmann, Felix
Segev, Idan
author_sort Amsalem, Oren
collection PubMed
description Detailed conductance-based nonlinear neuron models consisting of thousands of synapses are key for understanding of the computational properties of single neurons and large neuronal networks, and for interpreting experimental results. Simulations of these models are computationally expensive, considerably curtailing their utility. Neuron_Reduce is a new analytical approach to reduce the morphological complexity and computational time of nonlinear neuron models. Synapses and active membrane channels are mapped to the reduced model preserving their transfer impedance to the soma; synapses with identical transfer impedance are merged into one NEURON process still retaining their individual activation times. Neuron_Reduce accelerates the simulations by 40–250 folds for a variety of cell types and realistic number (10,000–100,000) of synapses while closely replicating voltage dynamics and specific dendritic computations. The reduced neuron-models will enable realistic simulations of neural networks at unprecedented scale, including networks emerging from micro-connectomics efforts and biologically-inspired “deep networks”. Neuron_Reduce is publicly available and is straightforward to implement.
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spelling pubmed-69621542020-01-17 An efficient analytical reduction of detailed nonlinear neuron models Amsalem, Oren Eyal, Guy Rogozinski, Noa Gevaert, Michael Kumbhar, Pramod Schürmann, Felix Segev, Idan Nat Commun Article Detailed conductance-based nonlinear neuron models consisting of thousands of synapses are key for understanding of the computational properties of single neurons and large neuronal networks, and for interpreting experimental results. Simulations of these models are computationally expensive, considerably curtailing their utility. Neuron_Reduce is a new analytical approach to reduce the morphological complexity and computational time of nonlinear neuron models. Synapses and active membrane channels are mapped to the reduced model preserving their transfer impedance to the soma; synapses with identical transfer impedance are merged into one NEURON process still retaining their individual activation times. Neuron_Reduce accelerates the simulations by 40–250 folds for a variety of cell types and realistic number (10,000–100,000) of synapses while closely replicating voltage dynamics and specific dendritic computations. The reduced neuron-models will enable realistic simulations of neural networks at unprecedented scale, including networks emerging from micro-connectomics efforts and biologically-inspired “deep networks”. Neuron_Reduce is publicly available and is straightforward to implement. Nature Publishing Group UK 2020-01-15 /pmc/articles/PMC6962154/ /pubmed/31941884 http://dx.doi.org/10.1038/s41467-019-13932-6 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Amsalem, Oren
Eyal, Guy
Rogozinski, Noa
Gevaert, Michael
Kumbhar, Pramod
Schürmann, Felix
Segev, Idan
An efficient analytical reduction of detailed nonlinear neuron models
title An efficient analytical reduction of detailed nonlinear neuron models
title_full An efficient analytical reduction of detailed nonlinear neuron models
title_fullStr An efficient analytical reduction of detailed nonlinear neuron models
title_full_unstemmed An efficient analytical reduction of detailed nonlinear neuron models
title_short An efficient analytical reduction of detailed nonlinear neuron models
title_sort efficient analytical reduction of detailed nonlinear neuron models
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6962154/
https://www.ncbi.nlm.nih.gov/pubmed/31941884
http://dx.doi.org/10.1038/s41467-019-13932-6
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