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Classification of Interstitial Lung Abnormality Patterns with an Ensemble of Deep Convolutional Neural Networks

Subtle interstitial changes in the lung parenchyma of smokers, known as Interstitial Lung Abnormalities (ILA), have been associated with clinical outcomes, including mortality, even in the absence of Interstitial Lung Disease (ILD). Although several methods have been proposed for the automatic ident...

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Autores principales: Bermejo-Peláez, David, Ash, Samuel Y., Washko, George R., San José Estépar, Raúl, Ledesma-Carbayo, María J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6962320/
https://www.ncbi.nlm.nih.gov/pubmed/31941918
http://dx.doi.org/10.1038/s41598-019-56989-5
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author Bermejo-Peláez, David
Ash, Samuel Y.
Washko, George R.
San José Estépar, Raúl
Ledesma-Carbayo, María J.
author_facet Bermejo-Peláez, David
Ash, Samuel Y.
Washko, George R.
San José Estépar, Raúl
Ledesma-Carbayo, María J.
author_sort Bermejo-Peláez, David
collection PubMed
description Subtle interstitial changes in the lung parenchyma of smokers, known as Interstitial Lung Abnormalities (ILA), have been associated with clinical outcomes, including mortality, even in the absence of Interstitial Lung Disease (ILD). Although several methods have been proposed for the automatic identification of more advanced Interstitial Lung Disease (ILD) patterns, few have tackled ILA, which likely precedes the development ILD in some cases. In this context, we propose a novel methodology for automated identification and classification of ILA patterns in computed tomography (CT) images. The proposed method is an ensemble of deep convolutional neural networks (CNNs) that detect more discriminative features by incorporating two, two-and-a-half and three- dimensional architectures, thereby enabling more accurate classification. This technique is implemented by first training each individual CNN, and then combining its output responses to form the overall ensemble output. To train and test the system we used 37424 radiographic tissue samples corresponding to eight different parenchymal feature classes from 208 CT scans. The resulting ensemble performance including an average sensitivity of 91,41% and average specificity of 98,18% suggests it is potentially a viable method to identify radiographic patterns that precede the development of ILD.
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spelling pubmed-69623202020-01-23 Classification of Interstitial Lung Abnormality Patterns with an Ensemble of Deep Convolutional Neural Networks Bermejo-Peláez, David Ash, Samuel Y. Washko, George R. San José Estépar, Raúl Ledesma-Carbayo, María J. Sci Rep Article Subtle interstitial changes in the lung parenchyma of smokers, known as Interstitial Lung Abnormalities (ILA), have been associated with clinical outcomes, including mortality, even in the absence of Interstitial Lung Disease (ILD). Although several methods have been proposed for the automatic identification of more advanced Interstitial Lung Disease (ILD) patterns, few have tackled ILA, which likely precedes the development ILD in some cases. In this context, we propose a novel methodology for automated identification and classification of ILA patterns in computed tomography (CT) images. The proposed method is an ensemble of deep convolutional neural networks (CNNs) that detect more discriminative features by incorporating two, two-and-a-half and three- dimensional architectures, thereby enabling more accurate classification. This technique is implemented by first training each individual CNN, and then combining its output responses to form the overall ensemble output. To train and test the system we used 37424 radiographic tissue samples corresponding to eight different parenchymal feature classes from 208 CT scans. The resulting ensemble performance including an average sensitivity of 91,41% and average specificity of 98,18% suggests it is potentially a viable method to identify radiographic patterns that precede the development of ILD. Nature Publishing Group UK 2020-01-15 /pmc/articles/PMC6962320/ /pubmed/31941918 http://dx.doi.org/10.1038/s41598-019-56989-5 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Bermejo-Peláez, David
Ash, Samuel Y.
Washko, George R.
San José Estépar, Raúl
Ledesma-Carbayo, María J.
Classification of Interstitial Lung Abnormality Patterns with an Ensemble of Deep Convolutional Neural Networks
title Classification of Interstitial Lung Abnormality Patterns with an Ensemble of Deep Convolutional Neural Networks
title_full Classification of Interstitial Lung Abnormality Patterns with an Ensemble of Deep Convolutional Neural Networks
title_fullStr Classification of Interstitial Lung Abnormality Patterns with an Ensemble of Deep Convolutional Neural Networks
title_full_unstemmed Classification of Interstitial Lung Abnormality Patterns with an Ensemble of Deep Convolutional Neural Networks
title_short Classification of Interstitial Lung Abnormality Patterns with an Ensemble of Deep Convolutional Neural Networks
title_sort classification of interstitial lung abnormality patterns with an ensemble of deep convolutional neural networks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6962320/
https://www.ncbi.nlm.nih.gov/pubmed/31941918
http://dx.doi.org/10.1038/s41598-019-56989-5
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