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A comparative study on predicting influenza outbreaks using different feature spaces: application of influenza-like illness data from Early Warning Alert and Response System in Syria
OBJECTIVE: An accurate forecasting of outbreaks of influenza-like illness (ILI) could support public health officials to suggest public health actions earlier. We investigated the performance of three different feature spaces in different models to forecast the weekly ILI rate in Syria using EWARS d...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6964210/ https://www.ncbi.nlm.nih.gov/pubmed/31948473 http://dx.doi.org/10.1186/s13104-020-4889-5 |
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author | Darwish, Ali Rahhal, Yasser Jafar, Assef |
author_facet | Darwish, Ali Rahhal, Yasser Jafar, Assef |
author_sort | Darwish, Ali |
collection | PubMed |
description | OBJECTIVE: An accurate forecasting of outbreaks of influenza-like illness (ILI) could support public health officials to suggest public health actions earlier. We investigated the performance of three different feature spaces in different models to forecast the weekly ILI rate in Syria using EWARS data from World Health Organization (WHO). Time series feature space was first used and we applied the seven models which are Naïve, Average, Seasonal naïve, drift, dynamic harmonic regression (Dhr), seasonal and trend decomposition using loess (STL) and TBATS. The Second feature space is like some state-of-the-art, which we named [Formula: see text] feature space. The third one, we proposed and named [Formula: see text] (YnWm) feature space. Machine learning (ML) and deep learning (DL) model were applied to the second and third feature spaces (generalized linear model (GLM), support vector regression (SVR), gradient boosting (GB), random forest (RF) and long short term memory (LSTM)). RESULTS: It was indicated that the LSTM model of four layers with [Formula: see text] feature space gave more accurate results than other models and reached the lowest MAPE of [Formula: see text] and the lowest RMSE of 0.01662. I hope that this modelling methodology can be applied in other countries and therefore help prevent and control influenza worldwide. |
format | Online Article Text |
id | pubmed-6964210 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-69642102020-01-27 A comparative study on predicting influenza outbreaks using different feature spaces: application of influenza-like illness data from Early Warning Alert and Response System in Syria Darwish, Ali Rahhal, Yasser Jafar, Assef BMC Res Notes Research Note OBJECTIVE: An accurate forecasting of outbreaks of influenza-like illness (ILI) could support public health officials to suggest public health actions earlier. We investigated the performance of three different feature spaces in different models to forecast the weekly ILI rate in Syria using EWARS data from World Health Organization (WHO). Time series feature space was first used and we applied the seven models which are Naïve, Average, Seasonal naïve, drift, dynamic harmonic regression (Dhr), seasonal and trend decomposition using loess (STL) and TBATS. The Second feature space is like some state-of-the-art, which we named [Formula: see text] feature space. The third one, we proposed and named [Formula: see text] (YnWm) feature space. Machine learning (ML) and deep learning (DL) model were applied to the second and third feature spaces (generalized linear model (GLM), support vector regression (SVR), gradient boosting (GB), random forest (RF) and long short term memory (LSTM)). RESULTS: It was indicated that the LSTM model of four layers with [Formula: see text] feature space gave more accurate results than other models and reached the lowest MAPE of [Formula: see text] and the lowest RMSE of 0.01662. I hope that this modelling methodology can be applied in other countries and therefore help prevent and control influenza worldwide. BioMed Central 2020-01-16 /pmc/articles/PMC6964210/ /pubmed/31948473 http://dx.doi.org/10.1186/s13104-020-4889-5 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Note Darwish, Ali Rahhal, Yasser Jafar, Assef A comparative study on predicting influenza outbreaks using different feature spaces: application of influenza-like illness data from Early Warning Alert and Response System in Syria |
title | A comparative study on predicting influenza outbreaks using different feature spaces: application of influenza-like illness data from Early Warning Alert and Response System in Syria |
title_full | A comparative study on predicting influenza outbreaks using different feature spaces: application of influenza-like illness data from Early Warning Alert and Response System in Syria |
title_fullStr | A comparative study on predicting influenza outbreaks using different feature spaces: application of influenza-like illness data from Early Warning Alert and Response System in Syria |
title_full_unstemmed | A comparative study on predicting influenza outbreaks using different feature spaces: application of influenza-like illness data from Early Warning Alert and Response System in Syria |
title_short | A comparative study on predicting influenza outbreaks using different feature spaces: application of influenza-like illness data from Early Warning Alert and Response System in Syria |
title_sort | comparative study on predicting influenza outbreaks using different feature spaces: application of influenza-like illness data from early warning alert and response system in syria |
topic | Research Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6964210/ https://www.ncbi.nlm.nih.gov/pubmed/31948473 http://dx.doi.org/10.1186/s13104-020-4889-5 |
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