Cargando…

A comparative study on predicting influenza outbreaks using different feature spaces: application of influenza-like illness data from Early Warning Alert and Response System in Syria

OBJECTIVE: An accurate forecasting of outbreaks of influenza-like illness (ILI) could support public health officials to suggest public health actions earlier. We investigated the performance of three different feature spaces in different models to forecast the weekly ILI rate in Syria using EWARS d...

Descripción completa

Detalles Bibliográficos
Autores principales: Darwish, Ali, Rahhal, Yasser, Jafar, Assef
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6964210/
https://www.ncbi.nlm.nih.gov/pubmed/31948473
http://dx.doi.org/10.1186/s13104-020-4889-5
_version_ 1783488443844657152
author Darwish, Ali
Rahhal, Yasser
Jafar, Assef
author_facet Darwish, Ali
Rahhal, Yasser
Jafar, Assef
author_sort Darwish, Ali
collection PubMed
description OBJECTIVE: An accurate forecasting of outbreaks of influenza-like illness (ILI) could support public health officials to suggest public health actions earlier. We investigated the performance of three different feature spaces in different models to forecast the weekly ILI rate in Syria using EWARS data from World Health Organization (WHO). Time series feature space was first used and we applied the seven models which are Naïve, Average, Seasonal naïve, drift, dynamic harmonic regression (Dhr), seasonal and trend decomposition using loess (STL) and TBATS. The Second feature space is like some state-of-the-art, which we named [Formula: see text] feature space. The third one, we proposed and named [Formula: see text] (YnWm) feature space. Machine learning (ML) and deep learning (DL) model were applied to the second and third feature spaces (generalized linear model (GLM), support vector regression (SVR), gradient boosting (GB), random forest (RF) and long short term memory (LSTM)). RESULTS: It was indicated that the LSTM model of four layers with [Formula: see text] feature space gave more accurate results than other models and reached the lowest MAPE of [Formula: see text] and the lowest RMSE of 0.01662. I hope that this modelling methodology can be applied in other countries and therefore help prevent and control influenza worldwide.
format Online
Article
Text
id pubmed-6964210
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-69642102020-01-27 A comparative study on predicting influenza outbreaks using different feature spaces: application of influenza-like illness data from Early Warning Alert and Response System in Syria Darwish, Ali Rahhal, Yasser Jafar, Assef BMC Res Notes Research Note OBJECTIVE: An accurate forecasting of outbreaks of influenza-like illness (ILI) could support public health officials to suggest public health actions earlier. We investigated the performance of three different feature spaces in different models to forecast the weekly ILI rate in Syria using EWARS data from World Health Organization (WHO). Time series feature space was first used and we applied the seven models which are Naïve, Average, Seasonal naïve, drift, dynamic harmonic regression (Dhr), seasonal and trend decomposition using loess (STL) and TBATS. The Second feature space is like some state-of-the-art, which we named [Formula: see text] feature space. The third one, we proposed and named [Formula: see text] (YnWm) feature space. Machine learning (ML) and deep learning (DL) model were applied to the second and third feature spaces (generalized linear model (GLM), support vector regression (SVR), gradient boosting (GB), random forest (RF) and long short term memory (LSTM)). RESULTS: It was indicated that the LSTM model of four layers with [Formula: see text] feature space gave more accurate results than other models and reached the lowest MAPE of [Formula: see text] and the lowest RMSE of 0.01662. I hope that this modelling methodology can be applied in other countries and therefore help prevent and control influenza worldwide. BioMed Central 2020-01-16 /pmc/articles/PMC6964210/ /pubmed/31948473 http://dx.doi.org/10.1186/s13104-020-4889-5 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research Note
Darwish, Ali
Rahhal, Yasser
Jafar, Assef
A comparative study on predicting influenza outbreaks using different feature spaces: application of influenza-like illness data from Early Warning Alert and Response System in Syria
title A comparative study on predicting influenza outbreaks using different feature spaces: application of influenza-like illness data from Early Warning Alert and Response System in Syria
title_full A comparative study on predicting influenza outbreaks using different feature spaces: application of influenza-like illness data from Early Warning Alert and Response System in Syria
title_fullStr A comparative study on predicting influenza outbreaks using different feature spaces: application of influenza-like illness data from Early Warning Alert and Response System in Syria
title_full_unstemmed A comparative study on predicting influenza outbreaks using different feature spaces: application of influenza-like illness data from Early Warning Alert and Response System in Syria
title_short A comparative study on predicting influenza outbreaks using different feature spaces: application of influenza-like illness data from Early Warning Alert and Response System in Syria
title_sort comparative study on predicting influenza outbreaks using different feature spaces: application of influenza-like illness data from early warning alert and response system in syria
topic Research Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6964210/
https://www.ncbi.nlm.nih.gov/pubmed/31948473
http://dx.doi.org/10.1186/s13104-020-4889-5
work_keys_str_mv AT darwishali acomparativestudyonpredictinginfluenzaoutbreaksusingdifferentfeaturespacesapplicationofinfluenzalikeillnessdatafromearlywarningalertandresponsesysteminsyria
AT rahhalyasser acomparativestudyonpredictinginfluenzaoutbreaksusingdifferentfeaturespacesapplicationofinfluenzalikeillnessdatafromearlywarningalertandresponsesysteminsyria
AT jafarassef acomparativestudyonpredictinginfluenzaoutbreaksusingdifferentfeaturespacesapplicationofinfluenzalikeillnessdatafromearlywarningalertandresponsesysteminsyria
AT darwishali comparativestudyonpredictinginfluenzaoutbreaksusingdifferentfeaturespacesapplicationofinfluenzalikeillnessdatafromearlywarningalertandresponsesysteminsyria
AT rahhalyasser comparativestudyonpredictinginfluenzaoutbreaksusingdifferentfeaturespacesapplicationofinfluenzalikeillnessdatafromearlywarningalertandresponsesysteminsyria
AT jafarassef comparativestudyonpredictinginfluenzaoutbreaksusingdifferentfeaturespacesapplicationofinfluenzalikeillnessdatafromearlywarningalertandresponsesysteminsyria