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Biobtree: A tool to search and map bioinformatics identifiers and special keywords
Biobtree is a bioinformatics tool to search and map bioinformatics datasets via identifiers or special keywords such as species name. It processes large bioinformatics datasets using a specialized MapReduce-based solution with optimum computational and storage resource usage. It provides uniform and...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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F1000 Research Limited
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6964641/ https://www.ncbi.nlm.nih.gov/pubmed/31984130 http://dx.doi.org/10.12688/f1000research.17927.4 |
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author | Gur, Tamer |
author_facet | Gur, Tamer |
author_sort | Gur, Tamer |
collection | PubMed |
description | Biobtree is a bioinformatics tool to search and map bioinformatics datasets via identifiers or special keywords such as species name. It processes large bioinformatics datasets using a specialized MapReduce-based solution with optimum computational and storage resource usage. It provides uniform and B+ tree-based database output, a web interface, web services and allows performing chain mapping queries between datasets. It can be used via a single executable file or alternatively it can be used via the R or Python-based wrapper packages which are additionally provided for easier integration into existing pipelines. Biobtree is open source and available at GitHub. |
format | Online Article Text |
id | pubmed-6964641 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | F1000 Research Limited |
record_format | MEDLINE/PubMed |
spelling | pubmed-69646412020-01-23 Biobtree: A tool to search and map bioinformatics identifiers and special keywords Gur, Tamer F1000Res Software Tool Article Biobtree is a bioinformatics tool to search and map bioinformatics datasets via identifiers or special keywords such as species name. It processes large bioinformatics datasets using a specialized MapReduce-based solution with optimum computational and storage resource usage. It provides uniform and B+ tree-based database output, a web interface, web services and allows performing chain mapping queries between datasets. It can be used via a single executable file or alternatively it can be used via the R or Python-based wrapper packages which are additionally provided for easier integration into existing pipelines. Biobtree is open source and available at GitHub. F1000 Research Limited 2020-01-20 /pmc/articles/PMC6964641/ /pubmed/31984130 http://dx.doi.org/10.12688/f1000research.17927.4 Text en Copyright: © 2020 Gur T http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Software Tool Article Gur, Tamer Biobtree: A tool to search and map bioinformatics identifiers and special keywords |
title | Biobtree: A tool to search and map bioinformatics identifiers and special keywords |
title_full | Biobtree: A tool to search and map bioinformatics identifiers and special keywords |
title_fullStr | Biobtree: A tool to search and map bioinformatics identifiers and special keywords |
title_full_unstemmed | Biobtree: A tool to search and map bioinformatics identifiers and special keywords |
title_short | Biobtree: A tool to search and map bioinformatics identifiers and special keywords |
title_sort | biobtree: a tool to search and map bioinformatics identifiers and special keywords |
topic | Software Tool Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6964641/ https://www.ncbi.nlm.nih.gov/pubmed/31984130 http://dx.doi.org/10.12688/f1000research.17927.4 |
work_keys_str_mv | AT gurtamer biobtreeatooltosearchandmapbioinformaticsidentifiersandspecialkeywords |