Cargando…

The mitochondrial genome of Apion squamigerum (Coleoptera, Curculionoidea, Brentidae) and the phylogenetic implications

In this article, we present the nearly complete mitochondrial genome (mitogenome) of the weevil beetle Apion squamigerum (Curculionoidea, Brentidae), assembled using data from Illumina next generation sequencing (NGS). This mitogenome was found to be very large, with the total length of 18,562 bp. T...

Descripción completa

Detalles Bibliográficos
Autores principales: Song, Nan, Li, Xinxin, Yin, Xinming, Li, Xinghao, Yin, Shengjun, Yang, Mingsheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6964704/
https://www.ncbi.nlm.nih.gov/pubmed/31976182
http://dx.doi.org/10.7717/peerj.8386
_version_ 1783488505290162176
author Song, Nan
Li, Xinxin
Yin, Xinming
Li, Xinghao
Yin, Shengjun
Yang, Mingsheng
author_facet Song, Nan
Li, Xinxin
Yin, Xinming
Li, Xinghao
Yin, Shengjun
Yang, Mingsheng
author_sort Song, Nan
collection PubMed
description In this article, we present the nearly complete mitochondrial genome (mitogenome) of the weevil beetle Apion squamigerum (Curculionoidea, Brentidae), assembled using data from Illumina next generation sequencing (NGS). This mitogenome was found to be very large, with the total length of 18,562 bp. Two trnM genes were identified. A large non-coding intergenic spacer spanning 1,949 bp occurred between trnI and trnM2. Combined with 111 existing weevil mitogenomes, we conducted phylogenetic reconstructions based on various datasets under maximum likelihood and Bayesian inference. Firstly, phylogenetic analyses robustly supported a sister group of A. squamigerum and Rhopalapion longirostre, namely, that two species of Apioninae (Brentidae) formed a clade. Within the entire Curculionoidea, the Nemonychidae diverged firstly, following the families Anthribidae and Attelabidae. In addition, a large clade comprising the sister families Brentidae and Curculionidae was strongly supported in all trees.
format Online
Article
Text
id pubmed-6964704
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher PeerJ Inc.
record_format MEDLINE/PubMed
spelling pubmed-69647042020-01-23 The mitochondrial genome of Apion squamigerum (Coleoptera, Curculionoidea, Brentidae) and the phylogenetic implications Song, Nan Li, Xinxin Yin, Xinming Li, Xinghao Yin, Shengjun Yang, Mingsheng PeerJ Biodiversity In this article, we present the nearly complete mitochondrial genome (mitogenome) of the weevil beetle Apion squamigerum (Curculionoidea, Brentidae), assembled using data from Illumina next generation sequencing (NGS). This mitogenome was found to be very large, with the total length of 18,562 bp. Two trnM genes were identified. A large non-coding intergenic spacer spanning 1,949 bp occurred between trnI and trnM2. Combined with 111 existing weevil mitogenomes, we conducted phylogenetic reconstructions based on various datasets under maximum likelihood and Bayesian inference. Firstly, phylogenetic analyses robustly supported a sister group of A. squamigerum and Rhopalapion longirostre, namely, that two species of Apioninae (Brentidae) formed a clade. Within the entire Curculionoidea, the Nemonychidae diverged firstly, following the families Anthribidae and Attelabidae. In addition, a large clade comprising the sister families Brentidae and Curculionidae was strongly supported in all trees. PeerJ Inc. 2020-01-13 /pmc/articles/PMC6964704/ /pubmed/31976182 http://dx.doi.org/10.7717/peerj.8386 Text en ©2020 Song et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Biodiversity
Song, Nan
Li, Xinxin
Yin, Xinming
Li, Xinghao
Yin, Shengjun
Yang, Mingsheng
The mitochondrial genome of Apion squamigerum (Coleoptera, Curculionoidea, Brentidae) and the phylogenetic implications
title The mitochondrial genome of Apion squamigerum (Coleoptera, Curculionoidea, Brentidae) and the phylogenetic implications
title_full The mitochondrial genome of Apion squamigerum (Coleoptera, Curculionoidea, Brentidae) and the phylogenetic implications
title_fullStr The mitochondrial genome of Apion squamigerum (Coleoptera, Curculionoidea, Brentidae) and the phylogenetic implications
title_full_unstemmed The mitochondrial genome of Apion squamigerum (Coleoptera, Curculionoidea, Brentidae) and the phylogenetic implications
title_short The mitochondrial genome of Apion squamigerum (Coleoptera, Curculionoidea, Brentidae) and the phylogenetic implications
title_sort mitochondrial genome of apion squamigerum (coleoptera, curculionoidea, brentidae) and the phylogenetic implications
topic Biodiversity
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6964704/
https://www.ncbi.nlm.nih.gov/pubmed/31976182
http://dx.doi.org/10.7717/peerj.8386
work_keys_str_mv AT songnan themitochondrialgenomeofapionsquamigerumcoleopteracurculionoideabrentidaeandthephylogeneticimplications
AT lixinxin themitochondrialgenomeofapionsquamigerumcoleopteracurculionoideabrentidaeandthephylogeneticimplications
AT yinxinming themitochondrialgenomeofapionsquamigerumcoleopteracurculionoideabrentidaeandthephylogeneticimplications
AT lixinghao themitochondrialgenomeofapionsquamigerumcoleopteracurculionoideabrentidaeandthephylogeneticimplications
AT yinshengjun themitochondrialgenomeofapionsquamigerumcoleopteracurculionoideabrentidaeandthephylogeneticimplications
AT yangmingsheng themitochondrialgenomeofapionsquamigerumcoleopteracurculionoideabrentidaeandthephylogeneticimplications
AT songnan mitochondrialgenomeofapionsquamigerumcoleopteracurculionoideabrentidaeandthephylogeneticimplications
AT lixinxin mitochondrialgenomeofapionsquamigerumcoleopteracurculionoideabrentidaeandthephylogeneticimplications
AT yinxinming mitochondrialgenomeofapionsquamigerumcoleopteracurculionoideabrentidaeandthephylogeneticimplications
AT lixinghao mitochondrialgenomeofapionsquamigerumcoleopteracurculionoideabrentidaeandthephylogeneticimplications
AT yinshengjun mitochondrialgenomeofapionsquamigerumcoleopteracurculionoideabrentidaeandthephylogeneticimplications
AT yangmingsheng mitochondrialgenomeofapionsquamigerumcoleopteracurculionoideabrentidaeandthephylogeneticimplications