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A network analysis to identify mediators of germline-driven differences in breast cancer prognosis
Identifying the underlying genetic drivers of the heritability of breast cancer prognosis remains elusive. We adapt a network-based approach to handle underpowered complex datasets to provide new insights into the potential function of germline variants in breast cancer prognosis. This network-based...
| Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
Nature Publishing Group UK
2020
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| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6965101/ https://www.ncbi.nlm.nih.gov/pubmed/31949161 http://dx.doi.org/10.1038/s41467-019-14100-6 |
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| author | Escala-Garcia, Maria Abraham, Jean Andrulis, Irene L. Anton-Culver, Hoda Arndt, Volker Ashworth, Alan Auer, Paul L. Auvinen, Päivi Beckmann, Matthias W. Beesley, Jonathan Behrens, Sabine Benitez, Javier Bermisheva, Marina Blomqvist, Carl Blot, William Bogdanova, Natalia V. Bojesen, Stig E. Bolla, Manjeet K. Børresen-Dale, Anne-Lise Brauch, Hiltrud Brenner, Hermann Brucker, Sara Y. Burwinkel, Barbara Caldas, Carlos Canzian, Federico Chang-Claude, Jenny Chanock, Stephen J. Chin, Suet-Feung Clarke, Christine L. Couch, Fergus J. Cox, Angela Cross, Simon S. Czene, Kamila Daly, Mary B. Dennis, Joe Devilee, Peter Dunn, Janet A. Dunning, Alison M. Dwek, Miriam Earl, Helena M. Eccles, Diana M. Eliassen, A. Heather Ellberg, Carolina Evans, D. Gareth Fasching, Peter A. Figueroa, Jonine Flyger, Henrik Gago-Dominguez, Manuela Gapstur, Susan M. García-Closas, Montserrat García-Sáenz, José A. Gaudet, Mia M. George, Angela Giles, Graham G. Goldgar, David E. González-Neira, Anna Grip, Mervi Guénel, Pascal Guo, Qi Haiman, Christopher A. Håkansson, Niclas Hamann, Ute Harrington, Patricia A. Hiller, Louise Hooning, Maartje J. Hopper, John L. Howell, Anthony Huang, Chiun-Sheng Huang, Guanmengqian Hunter, David J. Jakubowska, Anna John, Esther M. Kaaks, Rudolf Kapoor, Pooja Middha Keeman, Renske Kitahara, Cari M. Koppert, Linetta B. Kraft, Peter Kristensen, Vessela N. Lambrechts, Diether Le Marchand, Loic Lejbkowicz, Flavio Lindblom, Annika Lubiński, Jan Mannermaa, Arto Manoochehri, Mehdi Manoukian, Siranoush Margolin, Sara Martinez, Maria Elena Maurer, Tabea Mavroudis, Dimitrios Meindl, Alfons Milne, Roger L. Mulligan, Anna Marie Neuhausen, Susan L. Nevanlinna, Heli Newman, William G. Olshan, Andrew F. Olson, Janet E. Olsson, Håkan Orr, Nick Peterlongo, Paolo Petridis, Christos Prentice, Ross L. Presneau, Nadege Punie, Kevin Ramachandran, Dhanya Rennert, Gad Romero, Atocha Sachchithananthan, Mythily Saloustros, Emmanouil Sawyer, Elinor J. Schmutzler, Rita K. Schwentner, Lukas Scott, Christopher Simard, Jacques Sohn, Christof Southey, Melissa C. Swerdlow, Anthony J. Tamimi, Rulla M. Tapper, William J. Teixeira, Manuel R. Terry, Mary Beth Thorne, Heather Tollenaar, Rob A. E. M. Tomlinson, Ian Troester, Melissa A. Truong, Thérèse Turnbull, Clare Vachon, Celine M. van der Kolk, Lizet E. Wang, Qin Winqvist, Robert Wolk, Alicja Yang, Xiaohong R. Ziogas, Argyrios Pharoah, Paul D. P. Hall, Per Wessels, Lodewyk F. A. Chenevix-Trench, Georgia Bader, Gary D. Dörk, Thilo Easton, Douglas F. Canisius, Sander Schmidt, Marjanka K. |
| author_facet | Escala-Garcia, Maria Abraham, Jean Andrulis, Irene L. Anton-Culver, Hoda Arndt, Volker Ashworth, Alan Auer, Paul L. Auvinen, Päivi Beckmann, Matthias W. Beesley, Jonathan Behrens, Sabine Benitez, Javier Bermisheva, Marina Blomqvist, Carl Blot, William Bogdanova, Natalia V. Bojesen, Stig E. Bolla, Manjeet K. Børresen-Dale, Anne-Lise Brauch, Hiltrud Brenner, Hermann Brucker, Sara Y. Burwinkel, Barbara Caldas, Carlos Canzian, Federico Chang-Claude, Jenny Chanock, Stephen J. Chin, Suet-Feung Clarke, Christine L. Couch, Fergus J. Cox, Angela Cross, Simon S. Czene, Kamila Daly, Mary B. Dennis, Joe Devilee, Peter Dunn, Janet A. Dunning, Alison M. Dwek, Miriam Earl, Helena M. Eccles, Diana M. Eliassen, A. Heather Ellberg, Carolina Evans, D. Gareth Fasching, Peter A. Figueroa, Jonine Flyger, Henrik Gago-Dominguez, Manuela Gapstur, Susan M. García-Closas, Montserrat García-Sáenz, José A. Gaudet, Mia M. George, Angela Giles, Graham G. Goldgar, David E. González-Neira, Anna Grip, Mervi Guénel, Pascal Guo, Qi Haiman, Christopher A. Håkansson, Niclas Hamann, Ute Harrington, Patricia A. Hiller, Louise Hooning, Maartje J. Hopper, John L. Howell, Anthony Huang, Chiun-Sheng Huang, Guanmengqian Hunter, David J. Jakubowska, Anna John, Esther M. Kaaks, Rudolf Kapoor, Pooja Middha Keeman, Renske Kitahara, Cari M. Koppert, Linetta B. Kraft, Peter Kristensen, Vessela N. Lambrechts, Diether Le Marchand, Loic Lejbkowicz, Flavio Lindblom, Annika Lubiński, Jan Mannermaa, Arto Manoochehri, Mehdi Manoukian, Siranoush Margolin, Sara Martinez, Maria Elena Maurer, Tabea Mavroudis, Dimitrios Meindl, Alfons Milne, Roger L. Mulligan, Anna Marie Neuhausen, Susan L. Nevanlinna, Heli Newman, William G. Olshan, Andrew F. Olson, Janet E. Olsson, Håkan Orr, Nick Peterlongo, Paolo Petridis, Christos Prentice, Ross L. Presneau, Nadege Punie, Kevin Ramachandran, Dhanya Rennert, Gad Romero, Atocha Sachchithananthan, Mythily Saloustros, Emmanouil Sawyer, Elinor J. Schmutzler, Rita K. Schwentner, Lukas Scott, Christopher Simard, Jacques Sohn, Christof Southey, Melissa C. Swerdlow, Anthony J. Tamimi, Rulla M. Tapper, William J. Teixeira, Manuel R. Terry, Mary Beth Thorne, Heather Tollenaar, Rob A. E. M. Tomlinson, Ian Troester, Melissa A. Truong, Thérèse Turnbull, Clare Vachon, Celine M. van der Kolk, Lizet E. Wang, Qin Winqvist, Robert Wolk, Alicja Yang, Xiaohong R. Ziogas, Argyrios Pharoah, Paul D. P. Hall, Per Wessels, Lodewyk F. A. Chenevix-Trench, Georgia Bader, Gary D. Dörk, Thilo Easton, Douglas F. Canisius, Sander Schmidt, Marjanka K. |
| author_sort | Escala-Garcia, Maria |
| collection | PubMed |
| description | Identifying the underlying genetic drivers of the heritability of breast cancer prognosis remains elusive. We adapt a network-based approach to handle underpowered complex datasets to provide new insights into the potential function of germline variants in breast cancer prognosis. This network-based analysis studies ~7.3 million variants in 84,457 breast cancer patients in relation to breast cancer survival and confirms the results on 12,381 independent patients. Aggregating the prognostic effects of genetic variants across multiple genes, we identify four gene modules associated with survival in estrogen receptor (ER)-negative and one in ER-positive disease. The modules show biological enrichment for cancer-related processes such as G-alpha signaling, circadian clock, angiogenesis, and Rho-GTPases in apoptosis. |
| format | Online Article Text |
| id | pubmed-6965101 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2020 |
| publisher | Nature Publishing Group UK |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-69651012020-01-22 A network analysis to identify mediators of germline-driven differences in breast cancer prognosis Escala-Garcia, Maria Abraham, Jean Andrulis, Irene L. Anton-Culver, Hoda Arndt, Volker Ashworth, Alan Auer, Paul L. Auvinen, Päivi Beckmann, Matthias W. Beesley, Jonathan Behrens, Sabine Benitez, Javier Bermisheva, Marina Blomqvist, Carl Blot, William Bogdanova, Natalia V. Bojesen, Stig E. Bolla, Manjeet K. Børresen-Dale, Anne-Lise Brauch, Hiltrud Brenner, Hermann Brucker, Sara Y. Burwinkel, Barbara Caldas, Carlos Canzian, Federico Chang-Claude, Jenny Chanock, Stephen J. Chin, Suet-Feung Clarke, Christine L. Couch, Fergus J. Cox, Angela Cross, Simon S. Czene, Kamila Daly, Mary B. Dennis, Joe Devilee, Peter Dunn, Janet A. Dunning, Alison M. Dwek, Miriam Earl, Helena M. Eccles, Diana M. Eliassen, A. Heather Ellberg, Carolina Evans, D. Gareth Fasching, Peter A. Figueroa, Jonine Flyger, Henrik Gago-Dominguez, Manuela Gapstur, Susan M. García-Closas, Montserrat García-Sáenz, José A. Gaudet, Mia M. George, Angela Giles, Graham G. Goldgar, David E. González-Neira, Anna Grip, Mervi Guénel, Pascal Guo, Qi Haiman, Christopher A. Håkansson, Niclas Hamann, Ute Harrington, Patricia A. Hiller, Louise Hooning, Maartje J. Hopper, John L. Howell, Anthony Huang, Chiun-Sheng Huang, Guanmengqian Hunter, David J. Jakubowska, Anna John, Esther M. Kaaks, Rudolf Kapoor, Pooja Middha Keeman, Renske Kitahara, Cari M. Koppert, Linetta B. Kraft, Peter Kristensen, Vessela N. Lambrechts, Diether Le Marchand, Loic Lejbkowicz, Flavio Lindblom, Annika Lubiński, Jan Mannermaa, Arto Manoochehri, Mehdi Manoukian, Siranoush Margolin, Sara Martinez, Maria Elena Maurer, Tabea Mavroudis, Dimitrios Meindl, Alfons Milne, Roger L. Mulligan, Anna Marie Neuhausen, Susan L. Nevanlinna, Heli Newman, William G. Olshan, Andrew F. Olson, Janet E. Olsson, Håkan Orr, Nick Peterlongo, Paolo Petridis, Christos Prentice, Ross L. Presneau, Nadege Punie, Kevin Ramachandran, Dhanya Rennert, Gad Romero, Atocha Sachchithananthan, Mythily Saloustros, Emmanouil Sawyer, Elinor J. Schmutzler, Rita K. Schwentner, Lukas Scott, Christopher Simard, Jacques Sohn, Christof Southey, Melissa C. Swerdlow, Anthony J. Tamimi, Rulla M. Tapper, William J. Teixeira, Manuel R. Terry, Mary Beth Thorne, Heather Tollenaar, Rob A. E. M. Tomlinson, Ian Troester, Melissa A. Truong, Thérèse Turnbull, Clare Vachon, Celine M. van der Kolk, Lizet E. Wang, Qin Winqvist, Robert Wolk, Alicja Yang, Xiaohong R. Ziogas, Argyrios Pharoah, Paul D. P. Hall, Per Wessels, Lodewyk F. A. Chenevix-Trench, Georgia Bader, Gary D. Dörk, Thilo Easton, Douglas F. Canisius, Sander Schmidt, Marjanka K. Nat Commun Article Identifying the underlying genetic drivers of the heritability of breast cancer prognosis remains elusive. We adapt a network-based approach to handle underpowered complex datasets to provide new insights into the potential function of germline variants in breast cancer prognosis. This network-based analysis studies ~7.3 million variants in 84,457 breast cancer patients in relation to breast cancer survival and confirms the results on 12,381 independent patients. Aggregating the prognostic effects of genetic variants across multiple genes, we identify four gene modules associated with survival in estrogen receptor (ER)-negative and one in ER-positive disease. The modules show biological enrichment for cancer-related processes such as G-alpha signaling, circadian clock, angiogenesis, and Rho-GTPases in apoptosis. Nature Publishing Group UK 2020-01-16 /pmc/articles/PMC6965101/ /pubmed/31949161 http://dx.doi.org/10.1038/s41467-019-14100-6 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
| spellingShingle | Article Escala-Garcia, Maria Abraham, Jean Andrulis, Irene L. Anton-Culver, Hoda Arndt, Volker Ashworth, Alan Auer, Paul L. Auvinen, Päivi Beckmann, Matthias W. Beesley, Jonathan Behrens, Sabine Benitez, Javier Bermisheva, Marina Blomqvist, Carl Blot, William Bogdanova, Natalia V. Bojesen, Stig E. Bolla, Manjeet K. Børresen-Dale, Anne-Lise Brauch, Hiltrud Brenner, Hermann Brucker, Sara Y. Burwinkel, Barbara Caldas, Carlos Canzian, Federico Chang-Claude, Jenny Chanock, Stephen J. Chin, Suet-Feung Clarke, Christine L. Couch, Fergus J. Cox, Angela Cross, Simon S. Czene, Kamila Daly, Mary B. Dennis, Joe Devilee, Peter Dunn, Janet A. Dunning, Alison M. Dwek, Miriam Earl, Helena M. Eccles, Diana M. Eliassen, A. Heather Ellberg, Carolina Evans, D. Gareth Fasching, Peter A. Figueroa, Jonine Flyger, Henrik Gago-Dominguez, Manuela Gapstur, Susan M. García-Closas, Montserrat García-Sáenz, José A. Gaudet, Mia M. George, Angela Giles, Graham G. Goldgar, David E. González-Neira, Anna Grip, Mervi Guénel, Pascal Guo, Qi Haiman, Christopher A. Håkansson, Niclas Hamann, Ute Harrington, Patricia A. Hiller, Louise Hooning, Maartje J. Hopper, John L. Howell, Anthony Huang, Chiun-Sheng Huang, Guanmengqian Hunter, David J. Jakubowska, Anna John, Esther M. Kaaks, Rudolf Kapoor, Pooja Middha Keeman, Renske Kitahara, Cari M. Koppert, Linetta B. Kraft, Peter Kristensen, Vessela N. Lambrechts, Diether Le Marchand, Loic Lejbkowicz, Flavio Lindblom, Annika Lubiński, Jan Mannermaa, Arto Manoochehri, Mehdi Manoukian, Siranoush Margolin, Sara Martinez, Maria Elena Maurer, Tabea Mavroudis, Dimitrios Meindl, Alfons Milne, Roger L. Mulligan, Anna Marie Neuhausen, Susan L. Nevanlinna, Heli Newman, William G. Olshan, Andrew F. Olson, Janet E. Olsson, Håkan Orr, Nick Peterlongo, Paolo Petridis, Christos Prentice, Ross L. Presneau, Nadege Punie, Kevin Ramachandran, Dhanya Rennert, Gad Romero, Atocha Sachchithananthan, Mythily Saloustros, Emmanouil Sawyer, Elinor J. Schmutzler, Rita K. Schwentner, Lukas Scott, Christopher Simard, Jacques Sohn, Christof Southey, Melissa C. Swerdlow, Anthony J. Tamimi, Rulla M. Tapper, William J. Teixeira, Manuel R. Terry, Mary Beth Thorne, Heather Tollenaar, Rob A. E. M. Tomlinson, Ian Troester, Melissa A. Truong, Thérèse Turnbull, Clare Vachon, Celine M. van der Kolk, Lizet E. Wang, Qin Winqvist, Robert Wolk, Alicja Yang, Xiaohong R. Ziogas, Argyrios Pharoah, Paul D. P. Hall, Per Wessels, Lodewyk F. A. Chenevix-Trench, Georgia Bader, Gary D. Dörk, Thilo Easton, Douglas F. Canisius, Sander Schmidt, Marjanka K. A network analysis to identify mediators of germline-driven differences in breast cancer prognosis |
| title | A network analysis to identify mediators of germline-driven differences in breast cancer prognosis |
| title_full | A network analysis to identify mediators of germline-driven differences in breast cancer prognosis |
| title_fullStr | A network analysis to identify mediators of germline-driven differences in breast cancer prognosis |
| title_full_unstemmed | A network analysis to identify mediators of germline-driven differences in breast cancer prognosis |
| title_short | A network analysis to identify mediators of germline-driven differences in breast cancer prognosis |
| title_sort | network analysis to identify mediators of germline-driven differences in breast cancer prognosis |
| topic | Article |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6965101/ https://www.ncbi.nlm.nih.gov/pubmed/31949161 http://dx.doi.org/10.1038/s41467-019-14100-6 |
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