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The current understanding of KRAS protein structure and dynamics

One of the most common drivers in human cancer is the mutant KRAS protein. Not so long ago KRAS was considered as an undruggable oncoprotein. After a long struggle, however, we finally see some light at the end of the tunnel as promising KRAS targeted therapies are in or approaching clinical trials....

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Autor principal: Pantsar, Tatu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Research Network of Computational and Structural Biotechnology 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6965201/
https://www.ncbi.nlm.nih.gov/pubmed/31988705
http://dx.doi.org/10.1016/j.csbj.2019.12.004
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author Pantsar, Tatu
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description One of the most common drivers in human cancer is the mutant KRAS protein. Not so long ago KRAS was considered as an undruggable oncoprotein. After a long struggle, however, we finally see some light at the end of the tunnel as promising KRAS targeted therapies are in or approaching clinical trials. In recent years, together with the promising progress in RAS drug discovery, our understanding of KRAS has increased tremendously. This progress has been accompanied with a resurgence of publicly available KRAS structures, which were limited to nine structures less than ten years ago. Furthermore, the ever-increasing computational capacity has made biologically relevant timescales accessible, enabling molecular dynamics (MD) simulations to study the dynamics of KRAS protein in more detail at the atomistic level. In this minireview, my aim is to provide the reader an overview of the publicly available KRAS structural data, insights to conformational dynamics revealed by experiments and what we have learned from MD simulations. Also, I will discuss limitations of the current data and provide suggestions for future research related to KRAS, which would fill out the existing gaps in our knowledge and provide guidance in deciphering this enigmatic oncoprotein.
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spelling pubmed-69652012020-01-27 The current understanding of KRAS protein structure and dynamics Pantsar, Tatu Comput Struct Biotechnol J Review Article One of the most common drivers in human cancer is the mutant KRAS protein. Not so long ago KRAS was considered as an undruggable oncoprotein. After a long struggle, however, we finally see some light at the end of the tunnel as promising KRAS targeted therapies are in or approaching clinical trials. In recent years, together with the promising progress in RAS drug discovery, our understanding of KRAS has increased tremendously. This progress has been accompanied with a resurgence of publicly available KRAS structures, which were limited to nine structures less than ten years ago. Furthermore, the ever-increasing computational capacity has made biologically relevant timescales accessible, enabling molecular dynamics (MD) simulations to study the dynamics of KRAS protein in more detail at the atomistic level. In this minireview, my aim is to provide the reader an overview of the publicly available KRAS structural data, insights to conformational dynamics revealed by experiments and what we have learned from MD simulations. Also, I will discuss limitations of the current data and provide suggestions for future research related to KRAS, which would fill out the existing gaps in our knowledge and provide guidance in deciphering this enigmatic oncoprotein. Research Network of Computational and Structural Biotechnology 2019-12-26 /pmc/articles/PMC6965201/ /pubmed/31988705 http://dx.doi.org/10.1016/j.csbj.2019.12.004 Text en © 2019 The Author http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Review Article
Pantsar, Tatu
The current understanding of KRAS protein structure and dynamics
title The current understanding of KRAS protein structure and dynamics
title_full The current understanding of KRAS protein structure and dynamics
title_fullStr The current understanding of KRAS protein structure and dynamics
title_full_unstemmed The current understanding of KRAS protein structure and dynamics
title_short The current understanding of KRAS protein structure and dynamics
title_sort current understanding of kras protein structure and dynamics
topic Review Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6965201/
https://www.ncbi.nlm.nih.gov/pubmed/31988705
http://dx.doi.org/10.1016/j.csbj.2019.12.004
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