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A Circulating miRNA Signature for Stratification of Breast Lesions among Women with Abnormal Screening Mammograms
Although mammography is the gold standard for breast cancer screening, the high rates of false-positive mammograms remain a concern. Thus, there is an unmet clinical need for a non-invasive and reliable test to differentiate between malignant and benign breast lesions in order to avoid subjecting pa...
Autores principales: | , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6966622/ https://www.ncbi.nlm.nih.gov/pubmed/31769433 http://dx.doi.org/10.3390/cancers11121872 |
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author | Loke, Sau Yeen Munusamy, Prabhakaran Koh, Geok Ling Chan, Claire Hian Tzer Madhukumar, Preetha Thung, Jee Liang Tan, Kiat Tee Benita Ong, Kong Wee Yong, Wei Sean Sim, Yirong Oey, Chung Lie Lim, Sue Zann Chan, Mun Yew Patrick Ho, Teng Swan Juliana Khoo, Boon Kheng James Wong, Su Lin Jill Thng, Choon Hua Chong, Bee Kiang Tan, Ern Yu Tan, Veronique Kiak-Mien Lee, Ann Siew Gek |
author_facet | Loke, Sau Yeen Munusamy, Prabhakaran Koh, Geok Ling Chan, Claire Hian Tzer Madhukumar, Preetha Thung, Jee Liang Tan, Kiat Tee Benita Ong, Kong Wee Yong, Wei Sean Sim, Yirong Oey, Chung Lie Lim, Sue Zann Chan, Mun Yew Patrick Ho, Teng Swan Juliana Khoo, Boon Kheng James Wong, Su Lin Jill Thng, Choon Hua Chong, Bee Kiang Tan, Ern Yu Tan, Veronique Kiak-Mien Lee, Ann Siew Gek |
author_sort | Loke, Sau Yeen |
collection | PubMed |
description | Although mammography is the gold standard for breast cancer screening, the high rates of false-positive mammograms remain a concern. Thus, there is an unmet clinical need for a non-invasive and reliable test to differentiate between malignant and benign breast lesions in order to avoid subjecting patients with abnormal mammograms to unnecessary follow-up diagnostic procedures. Serum samples from 116 malignant breast lesions and 64 benign breast lesions were comprehensively profiled for 2,083 microRNAs (miRNAs) using next-generation sequencing. Of the 180 samples profiled, three outliers were removed based on the principal component analysis (PCA), and the remaining samples were divided into training (n = 125) and test (n = 52) sets at a 70:30 ratio for further analysis. In the training set, significantly differentially expressed miRNAs (adjusted p < 0.01) were identified after correcting for multiple testing using a false discovery rate. Subsequently, a predictive classification model using an eight-miRNA signature and a Bayesian logistic regression algorithm was developed. Based on the receiver operating characteristic (ROC) curve analysis in the test set, the model could achieve an area under the curve (AUC) of 0.9542. Together, this study demonstrates the potential use of circulating miRNAs as an adjunct test to stratify breast lesions in patients with abnormal screening mammograms. |
format | Online Article Text |
id | pubmed-6966622 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-69666222020-02-04 A Circulating miRNA Signature for Stratification of Breast Lesions among Women with Abnormal Screening Mammograms Loke, Sau Yeen Munusamy, Prabhakaran Koh, Geok Ling Chan, Claire Hian Tzer Madhukumar, Preetha Thung, Jee Liang Tan, Kiat Tee Benita Ong, Kong Wee Yong, Wei Sean Sim, Yirong Oey, Chung Lie Lim, Sue Zann Chan, Mun Yew Patrick Ho, Teng Swan Juliana Khoo, Boon Kheng James Wong, Su Lin Jill Thng, Choon Hua Chong, Bee Kiang Tan, Ern Yu Tan, Veronique Kiak-Mien Lee, Ann Siew Gek Cancers (Basel) Article Although mammography is the gold standard for breast cancer screening, the high rates of false-positive mammograms remain a concern. Thus, there is an unmet clinical need for a non-invasive and reliable test to differentiate between malignant and benign breast lesions in order to avoid subjecting patients with abnormal mammograms to unnecessary follow-up diagnostic procedures. Serum samples from 116 malignant breast lesions and 64 benign breast lesions were comprehensively profiled for 2,083 microRNAs (miRNAs) using next-generation sequencing. Of the 180 samples profiled, three outliers were removed based on the principal component analysis (PCA), and the remaining samples were divided into training (n = 125) and test (n = 52) sets at a 70:30 ratio for further analysis. In the training set, significantly differentially expressed miRNAs (adjusted p < 0.01) were identified after correcting for multiple testing using a false discovery rate. Subsequently, a predictive classification model using an eight-miRNA signature and a Bayesian logistic regression algorithm was developed. Based on the receiver operating characteristic (ROC) curve analysis in the test set, the model could achieve an area under the curve (AUC) of 0.9542. Together, this study demonstrates the potential use of circulating miRNAs as an adjunct test to stratify breast lesions in patients with abnormal screening mammograms. MDPI 2019-11-26 /pmc/articles/PMC6966622/ /pubmed/31769433 http://dx.doi.org/10.3390/cancers11121872 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Loke, Sau Yeen Munusamy, Prabhakaran Koh, Geok Ling Chan, Claire Hian Tzer Madhukumar, Preetha Thung, Jee Liang Tan, Kiat Tee Benita Ong, Kong Wee Yong, Wei Sean Sim, Yirong Oey, Chung Lie Lim, Sue Zann Chan, Mun Yew Patrick Ho, Teng Swan Juliana Khoo, Boon Kheng James Wong, Su Lin Jill Thng, Choon Hua Chong, Bee Kiang Tan, Ern Yu Tan, Veronique Kiak-Mien Lee, Ann Siew Gek A Circulating miRNA Signature for Stratification of Breast Lesions among Women with Abnormal Screening Mammograms |
title | A Circulating miRNA Signature for Stratification of Breast Lesions among Women with Abnormal Screening Mammograms |
title_full | A Circulating miRNA Signature for Stratification of Breast Lesions among Women with Abnormal Screening Mammograms |
title_fullStr | A Circulating miRNA Signature for Stratification of Breast Lesions among Women with Abnormal Screening Mammograms |
title_full_unstemmed | A Circulating miRNA Signature for Stratification of Breast Lesions among Women with Abnormal Screening Mammograms |
title_short | A Circulating miRNA Signature for Stratification of Breast Lesions among Women with Abnormal Screening Mammograms |
title_sort | circulating mirna signature for stratification of breast lesions among women with abnormal screening mammograms |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6966622/ https://www.ncbi.nlm.nih.gov/pubmed/31769433 http://dx.doi.org/10.3390/cancers11121872 |
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