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QSPR Models to Predict Thermodynamic Properties of Cycloalkanes Using Molecular Descriptors and GA-MLR Method
AIMS AND OBJECTIVES: QSPR models establish relationships between different types of structural information to their observed properties. In the present study the relationship between the molecular de-scriptors and quantum properties of cycloalkanes is represented. MATERIALS AND METHODS: Genetic Algo...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Bentham Science Publishers
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6967181/ https://www.ncbi.nlm.nih.gov/pubmed/30827257 http://dx.doi.org/10.2174/1573409915666190227230744 |
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author | Joudaki, Daryoush Shafiei, Fatemeh |
author_facet | Joudaki, Daryoush Shafiei, Fatemeh |
author_sort | Joudaki, Daryoush |
collection | PubMed |
description | AIMS AND OBJECTIVES: QSPR models establish relationships between different types of structural information to their observed properties. In the present study the relationship between the molecular de-scriptors and quantum properties of cycloalkanes is represented. MATERIALS AND METHODS: Genetic Algorithm (GA) and Multiple Linear Regressions (MLR) were successful-ly developed to predict quantum properties of cycloalkanes. A large number of molecular descriptors were calculated with Dragon software and a subset of calculated descriptors was selected with a genetic algorithm as a feature selection technique. The quantum properties consist of the heat capacity (Cv)/ Jmol-1K-1 entropy(S)/ Jmol-1K-1 and thermal energy(Eth)/ kJmol-1 were obtained from quantum-chemistry technique at the Hartree-Fock (HF) level using the ab initio 6-31G* basis sets. RESULTS: The Genetic Algorithm (GA) method was used to select important molecular descriptors and then they were used as inputs for SPSS software package. The predictive powers of the MLR models were dis-cussed using Leave-One-Out (LOO) cross-validation, leave-group (5-fold)-out (LGO) and external predic-tion series. The statistical parameters of the training and test sets for GA–MLR models were calculated. CONCLUSION: The resulting quantitative GA-MLR models of Cv, S, and Eth were obtained:[r2=0.950, Q2=0.989, r2ext=0.969, MAE(overall,5-flod)=0.6825 Jmol-1K-1], [r2=0.980, Q2=0.947, r2ext=0.943, MAE(overall,5-flod)=0.5891Jmol-1K-1], and [r2=0.980, Q2=0.809, r2ext=0.985, MAE(overall,5-flod)=2.0284 kJmol-1]. The results showed that the predictive ability of the models was satisfactory, and the constitutional, topological indices and ring descriptor could be used to predict the mentioned properties of 103 cycloalkanes. |
format | Online Article Text |
id | pubmed-6967181 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Bentham Science Publishers |
record_format | MEDLINE/PubMed |
spelling | pubmed-69671812020-01-31 QSPR Models to Predict Thermodynamic Properties of Cycloalkanes
Using Molecular Descriptors and GA-MLR Method Joudaki, Daryoush Shafiei, Fatemeh Curr Comput Aided Drug Des Article AIMS AND OBJECTIVES: QSPR models establish relationships between different types of structural information to their observed properties. In the present study the relationship between the molecular de-scriptors and quantum properties of cycloalkanes is represented. MATERIALS AND METHODS: Genetic Algorithm (GA) and Multiple Linear Regressions (MLR) were successful-ly developed to predict quantum properties of cycloalkanes. A large number of molecular descriptors were calculated with Dragon software and a subset of calculated descriptors was selected with a genetic algorithm as a feature selection technique. The quantum properties consist of the heat capacity (Cv)/ Jmol-1K-1 entropy(S)/ Jmol-1K-1 and thermal energy(Eth)/ kJmol-1 were obtained from quantum-chemistry technique at the Hartree-Fock (HF) level using the ab initio 6-31G* basis sets. RESULTS: The Genetic Algorithm (GA) method was used to select important molecular descriptors and then they were used as inputs for SPSS software package. The predictive powers of the MLR models were dis-cussed using Leave-One-Out (LOO) cross-validation, leave-group (5-fold)-out (LGO) and external predic-tion series. The statistical parameters of the training and test sets for GA–MLR models were calculated. CONCLUSION: The resulting quantitative GA-MLR models of Cv, S, and Eth were obtained:[r2=0.950, Q2=0.989, r2ext=0.969, MAE(overall,5-flod)=0.6825 Jmol-1K-1], [r2=0.980, Q2=0.947, r2ext=0.943, MAE(overall,5-flod)=0.5891Jmol-1K-1], and [r2=0.980, Q2=0.809, r2ext=0.985, MAE(overall,5-flod)=2.0284 kJmol-1]. The results showed that the predictive ability of the models was satisfactory, and the constitutional, topological indices and ring descriptor could be used to predict the mentioned properties of 103 cycloalkanes. Bentham Science Publishers 2020-02 2020-02 /pmc/articles/PMC6967181/ /pubmed/30827257 http://dx.doi.org/10.2174/1573409915666190227230744 Text en © 2020 Bentham Science Publishers https://creativecommons.org/licenses/by-nc/4.0/legalcode This is an open access article licensed under the terms of the Creative Commons Attribution-Non-Commercial 4.0 International Public License (CC BY-NC 4.0) (https://creativecommons.org/licenses/by-nc/4.0/legalcode), which permits unrestricted, non-commercial use, distribution and reproduction in any medium, provided the work is properly cited. |
spellingShingle | Article Joudaki, Daryoush Shafiei, Fatemeh QSPR Models to Predict Thermodynamic Properties of Cycloalkanes Using Molecular Descriptors and GA-MLR Method |
title | QSPR Models to Predict Thermodynamic Properties of Cycloalkanes
Using Molecular Descriptors and GA-MLR Method |
title_full | QSPR Models to Predict Thermodynamic Properties of Cycloalkanes
Using Molecular Descriptors and GA-MLR Method |
title_fullStr | QSPR Models to Predict Thermodynamic Properties of Cycloalkanes
Using Molecular Descriptors and GA-MLR Method |
title_full_unstemmed | QSPR Models to Predict Thermodynamic Properties of Cycloalkanes
Using Molecular Descriptors and GA-MLR Method |
title_short | QSPR Models to Predict Thermodynamic Properties of Cycloalkanes
Using Molecular Descriptors and GA-MLR Method |
title_sort | qspr models to predict thermodynamic properties of cycloalkanes
using molecular descriptors and ga-mlr method |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6967181/ https://www.ncbi.nlm.nih.gov/pubmed/30827257 http://dx.doi.org/10.2174/1573409915666190227230744 |
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