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QSPR Models to Predict Thermodynamic Properties of Cycloalkanes 
Using Molecular Descriptors and GA-MLR Method

AIMS AND OBJECTIVES: QSPR models establish relationships between different types of structural information to their observed properties. In the present study the relationship between the molecular de-scriptors and quantum properties of cycloalkanes is represented. MATERIALS AND METHODS: Genetic Algo...

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Autores principales: Joudaki, Daryoush, Shafiei, Fatemeh
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Bentham Science Publishers 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6967181/
https://www.ncbi.nlm.nih.gov/pubmed/30827257
http://dx.doi.org/10.2174/1573409915666190227230744
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author Joudaki, Daryoush
Shafiei, Fatemeh
author_facet Joudaki, Daryoush
Shafiei, Fatemeh
author_sort Joudaki, Daryoush
collection PubMed
description AIMS AND OBJECTIVES: QSPR models establish relationships between different types of structural information to their observed properties. In the present study the relationship between the molecular de-scriptors and quantum properties of cycloalkanes is represented. MATERIALS AND METHODS: Genetic Algorithm (GA) and Multiple Linear Regressions (MLR) were successful-ly developed to predict quantum properties of cycloalkanes. A large number of molecular descriptors were calculated with Dragon software and a subset of calculated descriptors was selected with a genetic algorithm as a feature selection technique. The quantum properties consist of the heat capacity (Cv)/ Jmol-1K-1 entropy(S)/ Jmol-1K-1 and thermal energy(Eth)/ kJmol-1 were obtained from quantum-chemistry technique at the Hartree-Fock (HF) level using the ab initio 6-31G* basis sets. RESULTS: The Genetic Algorithm (GA) method was used to select important molecular descriptors and then they were used as inputs for SPSS software package. The predictive powers of the MLR models were dis-cussed using Leave-One-Out (LOO) cross-validation, leave-group (5-fold)-out (LGO) and external predic-tion series. The statistical parameters of the training and test sets for GA–MLR models were calculated. CONCLUSION: The resulting quantitative GA-MLR models of Cv, S, and Eth were obtained:[r2=0.950, Q2=0.989, r2ext=0.969, MAE(overall,5-flod)=0.6825 Jmol-1K-1], [r2=0.980, Q2=0.947, r2ext=0.943, MAE(overall,5-flod)=0.5891Jmol-1K-1], and [r2=0.980, Q2=0.809, r2ext=0.985, MAE(overall,5-flod)=2.0284 kJmol-1]. The results showed that the predictive ability of the models was satisfactory, and the constitutional, topological indices and ring descriptor could be used to predict the mentioned properties of 103 cycloalkanes.
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spelling pubmed-69671812020-01-31 QSPR Models to Predict Thermodynamic Properties of Cycloalkanes 
Using Molecular Descriptors and GA-MLR Method Joudaki, Daryoush Shafiei, Fatemeh Curr Comput Aided Drug Des Article AIMS AND OBJECTIVES: QSPR models establish relationships between different types of structural information to their observed properties. In the present study the relationship between the molecular de-scriptors and quantum properties of cycloalkanes is represented. MATERIALS AND METHODS: Genetic Algorithm (GA) and Multiple Linear Regressions (MLR) were successful-ly developed to predict quantum properties of cycloalkanes. A large number of molecular descriptors were calculated with Dragon software and a subset of calculated descriptors was selected with a genetic algorithm as a feature selection technique. The quantum properties consist of the heat capacity (Cv)/ Jmol-1K-1 entropy(S)/ Jmol-1K-1 and thermal energy(Eth)/ kJmol-1 were obtained from quantum-chemistry technique at the Hartree-Fock (HF) level using the ab initio 6-31G* basis sets. RESULTS: The Genetic Algorithm (GA) method was used to select important molecular descriptors and then they were used as inputs for SPSS software package. The predictive powers of the MLR models were dis-cussed using Leave-One-Out (LOO) cross-validation, leave-group (5-fold)-out (LGO) and external predic-tion series. The statistical parameters of the training and test sets for GA–MLR models were calculated. CONCLUSION: The resulting quantitative GA-MLR models of Cv, S, and Eth were obtained:[r2=0.950, Q2=0.989, r2ext=0.969, MAE(overall,5-flod)=0.6825 Jmol-1K-1], [r2=0.980, Q2=0.947, r2ext=0.943, MAE(overall,5-flod)=0.5891Jmol-1K-1], and [r2=0.980, Q2=0.809, r2ext=0.985, MAE(overall,5-flod)=2.0284 kJmol-1]. The results showed that the predictive ability of the models was satisfactory, and the constitutional, topological indices and ring descriptor could be used to predict the mentioned properties of 103 cycloalkanes. Bentham Science Publishers 2020-02 2020-02 /pmc/articles/PMC6967181/ /pubmed/30827257 http://dx.doi.org/10.2174/1573409915666190227230744 Text en © 2020 Bentham Science Publishers https://creativecommons.org/licenses/by-nc/4.0/legalcode This is an open access article licensed under the terms of the Creative Commons Attribution-Non-Commercial 4.0 International Public License (CC BY-NC 4.0) (https://creativecommons.org/licenses/by-nc/4.0/legalcode), which permits unrestricted, non-commercial use, distribution and reproduction in any medium, provided the work is properly cited.
spellingShingle Article
Joudaki, Daryoush
Shafiei, Fatemeh
QSPR Models to Predict Thermodynamic Properties of Cycloalkanes 
Using Molecular Descriptors and GA-MLR Method
title QSPR Models to Predict Thermodynamic Properties of Cycloalkanes 
Using Molecular Descriptors and GA-MLR Method
title_full QSPR Models to Predict Thermodynamic Properties of Cycloalkanes 
Using Molecular Descriptors and GA-MLR Method
title_fullStr QSPR Models to Predict Thermodynamic Properties of Cycloalkanes 
Using Molecular Descriptors and GA-MLR Method
title_full_unstemmed QSPR Models to Predict Thermodynamic Properties of Cycloalkanes 
Using Molecular Descriptors and GA-MLR Method
title_short QSPR Models to Predict Thermodynamic Properties of Cycloalkanes 
Using Molecular Descriptors and GA-MLR Method
title_sort qspr models to predict thermodynamic properties of cycloalkanes 
using molecular descriptors and ga-mlr method
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6967181/
https://www.ncbi.nlm.nih.gov/pubmed/30827257
http://dx.doi.org/10.2174/1573409915666190227230744
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