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Transient amplifiers of selection and reducers of fixation for death-Birth updating on graphs
The spatial structure of an evolving population affects the balance of natural selection versus genetic drift. Some structures amplify selection, increasing the role that fitness differences play in determining which mutations become fixed. Other structures suppress selection, reducing the effect of...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6968840/ https://www.ncbi.nlm.nih.gov/pubmed/31951612 http://dx.doi.org/10.1371/journal.pcbi.1007529 |
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author | Allen, Benjamin Sample, Christine Jencks, Robert Withers, James Steinhagen, Patricia Brizuela, Lori Kolodny, Joshua Parke, Darren Lippner, Gabor Dementieva, Yulia A. |
author_facet | Allen, Benjamin Sample, Christine Jencks, Robert Withers, James Steinhagen, Patricia Brizuela, Lori Kolodny, Joshua Parke, Darren Lippner, Gabor Dementieva, Yulia A. |
author_sort | Allen, Benjamin |
collection | PubMed |
description | The spatial structure of an evolving population affects the balance of natural selection versus genetic drift. Some structures amplify selection, increasing the role that fitness differences play in determining which mutations become fixed. Other structures suppress selection, reducing the effect of fitness differences and increasing the role of random chance. This phenomenon can be modeled by representing spatial structure as a graph, with individuals occupying vertices. Births and deaths occur stochastically, according to a specified update rule. We study death-Birth updating: An individual is chosen to die and then its neighbors compete to reproduce into the vacant spot. Previous numerical experiments suggested that amplifiers of selection for this process are either rare or nonexistent. We introduce a perturbative method for this problem for weak selection regime, meaning that mutations have small fitness effects. We show that fixation probability under weak selection can be calculated in terms of the coalescence times of random walks. This result leads naturally to a new definition of effective population size. Using this and other methods, we uncover the first known examples of transient amplifiers of selection (graphs that amplify selection for a particular range of fitness values) for the death-Birth process. We also exhibit new families of “reducers of fixation”, which decrease the fixation probability of all mutations, whether beneficial or deleterious. |
format | Online Article Text |
id | pubmed-6968840 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-69688402020-01-26 Transient amplifiers of selection and reducers of fixation for death-Birth updating on graphs Allen, Benjamin Sample, Christine Jencks, Robert Withers, James Steinhagen, Patricia Brizuela, Lori Kolodny, Joshua Parke, Darren Lippner, Gabor Dementieva, Yulia A. PLoS Comput Biol Research Article The spatial structure of an evolving population affects the balance of natural selection versus genetic drift. Some structures amplify selection, increasing the role that fitness differences play in determining which mutations become fixed. Other structures suppress selection, reducing the effect of fitness differences and increasing the role of random chance. This phenomenon can be modeled by representing spatial structure as a graph, with individuals occupying vertices. Births and deaths occur stochastically, according to a specified update rule. We study death-Birth updating: An individual is chosen to die and then its neighbors compete to reproduce into the vacant spot. Previous numerical experiments suggested that amplifiers of selection for this process are either rare or nonexistent. We introduce a perturbative method for this problem for weak selection regime, meaning that mutations have small fitness effects. We show that fixation probability under weak selection can be calculated in terms of the coalescence times of random walks. This result leads naturally to a new definition of effective population size. Using this and other methods, we uncover the first known examples of transient amplifiers of selection (graphs that amplify selection for a particular range of fitness values) for the death-Birth process. We also exhibit new families of “reducers of fixation”, which decrease the fixation probability of all mutations, whether beneficial or deleterious. Public Library of Science 2020-01-17 /pmc/articles/PMC6968840/ /pubmed/31951612 http://dx.doi.org/10.1371/journal.pcbi.1007529 Text en © 2020 Allen et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Allen, Benjamin Sample, Christine Jencks, Robert Withers, James Steinhagen, Patricia Brizuela, Lori Kolodny, Joshua Parke, Darren Lippner, Gabor Dementieva, Yulia A. Transient amplifiers of selection and reducers of fixation for death-Birth updating on graphs |
title | Transient amplifiers of selection and reducers of fixation for death-Birth updating on graphs |
title_full | Transient amplifiers of selection and reducers of fixation for death-Birth updating on graphs |
title_fullStr | Transient amplifiers of selection and reducers of fixation for death-Birth updating on graphs |
title_full_unstemmed | Transient amplifiers of selection and reducers of fixation for death-Birth updating on graphs |
title_short | Transient amplifiers of selection and reducers of fixation for death-Birth updating on graphs |
title_sort | transient amplifiers of selection and reducers of fixation for death-birth updating on graphs |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6968840/ https://www.ncbi.nlm.nih.gov/pubmed/31951612 http://dx.doi.org/10.1371/journal.pcbi.1007529 |
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