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Mikania micrantha genome provides insights into the molecular mechanism of rapid growth

Mikania micrantha is one of the top 100 worst invasive species that can cause serious damage to natural ecosystems and substantial economic losses. Here, we present its 1.79 Gb chromosome-scale reference genome. Half of the genome is composed of long terminal repeat retrotransposons, 80% of which ha...

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Autores principales: Liu, Bo, Yan, Jian, Li, Weihua, Yin, Lijuan, Li, Ping, Yu, Hanxia, Xing, Longsheng, Cai, Minling, Wang, Hengchao, Zhao, Mengxin, Zheng, Jin, Sun, Feng, Wang, Zhenzhen, Jiang, Zhaoyang, Ou, Qiaojing, Li, Shubin, Qu, Lu, Zhang, Qilei, Zheng, Yaping, Qiao, Xi, Xi, Yu, Zhang, Yan, Jiang, Fan, Huang, Cong, Liu, Conghui, Ren, Yuwei, Wang, Sen, Liu, Hangwei, Guo, Jianyang, Wang, Haihong, Dong, Hui, Peng, Changlian, Qian, Wanqiang, Fan, Wei, Wan, Fanghao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6969026/
https://www.ncbi.nlm.nih.gov/pubmed/31953413
http://dx.doi.org/10.1038/s41467-019-13926-4
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author Liu, Bo
Yan, Jian
Li, Weihua
Yin, Lijuan
Li, Ping
Yu, Hanxia
Xing, Longsheng
Cai, Minling
Wang, Hengchao
Zhao, Mengxin
Zheng, Jin
Sun, Feng
Wang, Zhenzhen
Jiang, Zhaoyang
Ou, Qiaojing
Li, Shubin
Qu, Lu
Zhang, Qilei
Zheng, Yaping
Qiao, Xi
Xi, Yu
Zhang, Yan
Jiang, Fan
Huang, Cong
Liu, Conghui
Ren, Yuwei
Wang, Sen
Liu, Hangwei
Guo, Jianyang
Wang, Haihong
Dong, Hui
Peng, Changlian
Qian, Wanqiang
Fan, Wei
Wan, Fanghao
author_facet Liu, Bo
Yan, Jian
Li, Weihua
Yin, Lijuan
Li, Ping
Yu, Hanxia
Xing, Longsheng
Cai, Minling
Wang, Hengchao
Zhao, Mengxin
Zheng, Jin
Sun, Feng
Wang, Zhenzhen
Jiang, Zhaoyang
Ou, Qiaojing
Li, Shubin
Qu, Lu
Zhang, Qilei
Zheng, Yaping
Qiao, Xi
Xi, Yu
Zhang, Yan
Jiang, Fan
Huang, Cong
Liu, Conghui
Ren, Yuwei
Wang, Sen
Liu, Hangwei
Guo, Jianyang
Wang, Haihong
Dong, Hui
Peng, Changlian
Qian, Wanqiang
Fan, Wei
Wan, Fanghao
author_sort Liu, Bo
collection PubMed
description Mikania micrantha is one of the top 100 worst invasive species that can cause serious damage to natural ecosystems and substantial economic losses. Here, we present its 1.79 Gb chromosome-scale reference genome. Half of the genome is composed of long terminal repeat retrotransposons, 80% of which have been derived from a significant expansion in the past one million years. We identify a whole genome duplication event and recent segmental duplications, which may be responsible for its rapid environmental adaptation. Additionally, we show that M. micrantha achieves higher photosynthetic capacity by CO(2) absorption at night to supplement the carbon fixation during the day, as well as enhanced stem photosynthesis efficiency. Furthermore, the metabolites of M. micrantha can increase the availability of nitrogen by enriching the microbes that participate in nitrogen cycling pathways. These findings collectively provide insights into the rapid growth and invasive adaptation.
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spelling pubmed-69690262020-01-21 Mikania micrantha genome provides insights into the molecular mechanism of rapid growth Liu, Bo Yan, Jian Li, Weihua Yin, Lijuan Li, Ping Yu, Hanxia Xing, Longsheng Cai, Minling Wang, Hengchao Zhao, Mengxin Zheng, Jin Sun, Feng Wang, Zhenzhen Jiang, Zhaoyang Ou, Qiaojing Li, Shubin Qu, Lu Zhang, Qilei Zheng, Yaping Qiao, Xi Xi, Yu Zhang, Yan Jiang, Fan Huang, Cong Liu, Conghui Ren, Yuwei Wang, Sen Liu, Hangwei Guo, Jianyang Wang, Haihong Dong, Hui Peng, Changlian Qian, Wanqiang Fan, Wei Wan, Fanghao Nat Commun Article Mikania micrantha is one of the top 100 worst invasive species that can cause serious damage to natural ecosystems and substantial economic losses. Here, we present its 1.79 Gb chromosome-scale reference genome. Half of the genome is composed of long terminal repeat retrotransposons, 80% of which have been derived from a significant expansion in the past one million years. We identify a whole genome duplication event and recent segmental duplications, which may be responsible for its rapid environmental adaptation. Additionally, we show that M. micrantha achieves higher photosynthetic capacity by CO(2) absorption at night to supplement the carbon fixation during the day, as well as enhanced stem photosynthesis efficiency. Furthermore, the metabolites of M. micrantha can increase the availability of nitrogen by enriching the microbes that participate in nitrogen cycling pathways. These findings collectively provide insights into the rapid growth and invasive adaptation. Nature Publishing Group UK 2020-01-17 /pmc/articles/PMC6969026/ /pubmed/31953413 http://dx.doi.org/10.1038/s41467-019-13926-4 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Liu, Bo
Yan, Jian
Li, Weihua
Yin, Lijuan
Li, Ping
Yu, Hanxia
Xing, Longsheng
Cai, Minling
Wang, Hengchao
Zhao, Mengxin
Zheng, Jin
Sun, Feng
Wang, Zhenzhen
Jiang, Zhaoyang
Ou, Qiaojing
Li, Shubin
Qu, Lu
Zhang, Qilei
Zheng, Yaping
Qiao, Xi
Xi, Yu
Zhang, Yan
Jiang, Fan
Huang, Cong
Liu, Conghui
Ren, Yuwei
Wang, Sen
Liu, Hangwei
Guo, Jianyang
Wang, Haihong
Dong, Hui
Peng, Changlian
Qian, Wanqiang
Fan, Wei
Wan, Fanghao
Mikania micrantha genome provides insights into the molecular mechanism of rapid growth
title Mikania micrantha genome provides insights into the molecular mechanism of rapid growth
title_full Mikania micrantha genome provides insights into the molecular mechanism of rapid growth
title_fullStr Mikania micrantha genome provides insights into the molecular mechanism of rapid growth
title_full_unstemmed Mikania micrantha genome provides insights into the molecular mechanism of rapid growth
title_short Mikania micrantha genome provides insights into the molecular mechanism of rapid growth
title_sort mikania micrantha genome provides insights into the molecular mechanism of rapid growth
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6969026/
https://www.ncbi.nlm.nih.gov/pubmed/31953413
http://dx.doi.org/10.1038/s41467-019-13926-4
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