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Deep neural networks for automated detection of marine mammal species

Deep neural networks have advanced the field of detection and classification and allowed for effective identification of signals in challenging data sets. Numerous time-critical conservation needs may benefit from these methods. We developed and empirically studied a variety of deep neural networks...

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Autores principales: Shiu, Yu, Palmer, K. J., Roch, Marie A., Fleishman, Erica, Liu, Xiaobai, Nosal, Eva-Marie, Helble, Tyler, Cholewiak, Danielle, Gillespie, Douglas, Klinck, Holger
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6969184/
https://www.ncbi.nlm.nih.gov/pubmed/31953462
http://dx.doi.org/10.1038/s41598-020-57549-y
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author Shiu, Yu
Palmer, K. J.
Roch, Marie A.
Fleishman, Erica
Liu, Xiaobai
Nosal, Eva-Marie
Helble, Tyler
Cholewiak, Danielle
Gillespie, Douglas
Klinck, Holger
author_facet Shiu, Yu
Palmer, K. J.
Roch, Marie A.
Fleishman, Erica
Liu, Xiaobai
Nosal, Eva-Marie
Helble, Tyler
Cholewiak, Danielle
Gillespie, Douglas
Klinck, Holger
author_sort Shiu, Yu
collection PubMed
description Deep neural networks have advanced the field of detection and classification and allowed for effective identification of signals in challenging data sets. Numerous time-critical conservation needs may benefit from these methods. We developed and empirically studied a variety of deep neural networks to detect the vocalizations of endangered North Atlantic right whales (Eubalaena glacialis). We compared the performance of these deep architectures to that of traditional detection algorithms for the primary vocalization produced by this species, the upcall. We show that deep-learning architectures are capable of producing false-positive rates that are orders of magnitude lower than alternative algorithms while substantially increasing the ability to detect calls. We demonstrate that a deep neural network trained with recordings from a single geographic region recorded over a span of days is capable of generalizing well to data from multiple years and across the species’ range, and that the low false positives make the output of the algorithm amenable to quality control for verification. The deep neural networks we developed are relatively easy to implement with existing software, and may provide new insights applicable to the conservation of endangered species.
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spelling pubmed-69691842020-01-22 Deep neural networks for automated detection of marine mammal species Shiu, Yu Palmer, K. J. Roch, Marie A. Fleishman, Erica Liu, Xiaobai Nosal, Eva-Marie Helble, Tyler Cholewiak, Danielle Gillespie, Douglas Klinck, Holger Sci Rep Article Deep neural networks have advanced the field of detection and classification and allowed for effective identification of signals in challenging data sets. Numerous time-critical conservation needs may benefit from these methods. We developed and empirically studied a variety of deep neural networks to detect the vocalizations of endangered North Atlantic right whales (Eubalaena glacialis). We compared the performance of these deep architectures to that of traditional detection algorithms for the primary vocalization produced by this species, the upcall. We show that deep-learning architectures are capable of producing false-positive rates that are orders of magnitude lower than alternative algorithms while substantially increasing the ability to detect calls. We demonstrate that a deep neural network trained with recordings from a single geographic region recorded over a span of days is capable of generalizing well to data from multiple years and across the species’ range, and that the low false positives make the output of the algorithm amenable to quality control for verification. The deep neural networks we developed are relatively easy to implement with existing software, and may provide new insights applicable to the conservation of endangered species. Nature Publishing Group UK 2020-01-17 /pmc/articles/PMC6969184/ /pubmed/31953462 http://dx.doi.org/10.1038/s41598-020-57549-y Text en © The Author(s) 2020, corrected publication 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Shiu, Yu
Palmer, K. J.
Roch, Marie A.
Fleishman, Erica
Liu, Xiaobai
Nosal, Eva-Marie
Helble, Tyler
Cholewiak, Danielle
Gillespie, Douglas
Klinck, Holger
Deep neural networks for automated detection of marine mammal species
title Deep neural networks for automated detection of marine mammal species
title_full Deep neural networks for automated detection of marine mammal species
title_fullStr Deep neural networks for automated detection of marine mammal species
title_full_unstemmed Deep neural networks for automated detection of marine mammal species
title_short Deep neural networks for automated detection of marine mammal species
title_sort deep neural networks for automated detection of marine mammal species
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6969184/
https://www.ncbi.nlm.nih.gov/pubmed/31953462
http://dx.doi.org/10.1038/s41598-020-57549-y
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