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Data describing the experimental design and quality control of RNA-Seq of human adipose-derived stem cells undergoing early adipogenesis and osteogenesis
An important tool to study the regulation of gene expression is the sequencing and the analysis of different RNA fractions: total, ribosome-free, monosomal and polysomal. By comparing these different populations, it is possible to identity which genes are differentially expressed and to get informat...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6970145/ https://www.ncbi.nlm.nih.gov/pubmed/31989002 http://dx.doi.org/10.1016/j.dib.2019.105053 |
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author | Marcon, Bruna H. Spangenberg, Lucia Bonilauri, Bernardo Robert, Anny Waloski Angulski, Addeli Bez Batti Cabo, Guillermo Cabrera Cofré, Axel R. Bettes, Paulo Sergio Loiacono Dallagiovanna, Bruno Shigunov, Patrícia |
author_facet | Marcon, Bruna H. Spangenberg, Lucia Bonilauri, Bernardo Robert, Anny Waloski Angulski, Addeli Bez Batti Cabo, Guillermo Cabrera Cofré, Axel R. Bettes, Paulo Sergio Loiacono Dallagiovanna, Bruno Shigunov, Patrícia |
author_sort | Marcon, Bruna H. |
collection | PubMed |
description | An important tool to study the regulation of gene expression is the sequencing and the analysis of different RNA fractions: total, ribosome-free, monosomal and polysomal. By comparing these different populations, it is possible to identity which genes are differentially expressed and to get information on how transcriptional and translational regulation modulates cellular function. Therefore, we used this strategy to analyze the regulation of gene expression of human adipose-derived stem cells during the triggering of the adipogenic and osteogenic differentiation. Here, we have focused on analyzing the differential expression of mRNAs during early adipogenic and osteogenic differentiation, and presented the detailed data concerning the experimental design, the RNA-Seq quality data, the raw data obtained and the RT-qPCR validation data. This information is important to confirm the accuracy of the data considering a future reuse of the data provided. Moreover, this study may be used as groundwork for future characterization of the transcriptome and the translatome regulation of different cell types. |
format | Online Article Text |
id | pubmed-6970145 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-69701452020-01-27 Data describing the experimental design and quality control of RNA-Seq of human adipose-derived stem cells undergoing early adipogenesis and osteogenesis Marcon, Bruna H. Spangenberg, Lucia Bonilauri, Bernardo Robert, Anny Waloski Angulski, Addeli Bez Batti Cabo, Guillermo Cabrera Cofré, Axel R. Bettes, Paulo Sergio Loiacono Dallagiovanna, Bruno Shigunov, Patrícia Data Brief Genetics, Genomics and Molecular Biology An important tool to study the regulation of gene expression is the sequencing and the analysis of different RNA fractions: total, ribosome-free, monosomal and polysomal. By comparing these different populations, it is possible to identity which genes are differentially expressed and to get information on how transcriptional and translational regulation modulates cellular function. Therefore, we used this strategy to analyze the regulation of gene expression of human adipose-derived stem cells during the triggering of the adipogenic and osteogenic differentiation. Here, we have focused on analyzing the differential expression of mRNAs during early adipogenic and osteogenic differentiation, and presented the detailed data concerning the experimental design, the RNA-Seq quality data, the raw data obtained and the RT-qPCR validation data. This information is important to confirm the accuracy of the data considering a future reuse of the data provided. Moreover, this study may be used as groundwork for future characterization of the transcriptome and the translatome regulation of different cell types. Elsevier 2019-12-31 /pmc/articles/PMC6970145/ /pubmed/31989002 http://dx.doi.org/10.1016/j.dib.2019.105053 Text en © 2019 The Author(s) http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Genetics, Genomics and Molecular Biology Marcon, Bruna H. Spangenberg, Lucia Bonilauri, Bernardo Robert, Anny Waloski Angulski, Addeli Bez Batti Cabo, Guillermo Cabrera Cofré, Axel R. Bettes, Paulo Sergio Loiacono Dallagiovanna, Bruno Shigunov, Patrícia Data describing the experimental design and quality control of RNA-Seq of human adipose-derived stem cells undergoing early adipogenesis and osteogenesis |
title | Data describing the experimental design and quality control of RNA-Seq of human adipose-derived stem cells undergoing early adipogenesis and osteogenesis |
title_full | Data describing the experimental design and quality control of RNA-Seq of human adipose-derived stem cells undergoing early adipogenesis and osteogenesis |
title_fullStr | Data describing the experimental design and quality control of RNA-Seq of human adipose-derived stem cells undergoing early adipogenesis and osteogenesis |
title_full_unstemmed | Data describing the experimental design and quality control of RNA-Seq of human adipose-derived stem cells undergoing early adipogenesis and osteogenesis |
title_short | Data describing the experimental design and quality control of RNA-Seq of human adipose-derived stem cells undergoing early adipogenesis and osteogenesis |
title_sort | data describing the experimental design and quality control of rna-seq of human adipose-derived stem cells undergoing early adipogenesis and osteogenesis |
topic | Genetics, Genomics and Molecular Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6970145/ https://www.ncbi.nlm.nih.gov/pubmed/31989002 http://dx.doi.org/10.1016/j.dib.2019.105053 |
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