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Data describing the experimental design and quality control of RNA-Seq of human adipose-derived stem cells undergoing early adipogenesis and osteogenesis

An important tool to study the regulation of gene expression is the sequencing and the analysis of different RNA fractions: total, ribosome-free, monosomal and polysomal. By comparing these different populations, it is possible to identity which genes are differentially expressed and to get informat...

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Autores principales: Marcon, Bruna H., Spangenberg, Lucia, Bonilauri, Bernardo, Robert, Anny Waloski, Angulski, Addeli Bez Batti, Cabo, Guillermo Cabrera, Cofré, Axel R., Bettes, Paulo Sergio Loiacono, Dallagiovanna, Bruno, Shigunov, Patrícia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6970145/
https://www.ncbi.nlm.nih.gov/pubmed/31989002
http://dx.doi.org/10.1016/j.dib.2019.105053
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author Marcon, Bruna H.
Spangenberg, Lucia
Bonilauri, Bernardo
Robert, Anny Waloski
Angulski, Addeli Bez Batti
Cabo, Guillermo Cabrera
Cofré, Axel R.
Bettes, Paulo Sergio Loiacono
Dallagiovanna, Bruno
Shigunov, Patrícia
author_facet Marcon, Bruna H.
Spangenberg, Lucia
Bonilauri, Bernardo
Robert, Anny Waloski
Angulski, Addeli Bez Batti
Cabo, Guillermo Cabrera
Cofré, Axel R.
Bettes, Paulo Sergio Loiacono
Dallagiovanna, Bruno
Shigunov, Patrícia
author_sort Marcon, Bruna H.
collection PubMed
description An important tool to study the regulation of gene expression is the sequencing and the analysis of different RNA fractions: total, ribosome-free, monosomal and polysomal. By comparing these different populations, it is possible to identity which genes are differentially expressed and to get information on how transcriptional and translational regulation modulates cellular function. Therefore, we used this strategy to analyze the regulation of gene expression of human adipose-derived stem cells during the triggering of the adipogenic and osteogenic differentiation. Here, we have focused on analyzing the differential expression of mRNAs during early adipogenic and osteogenic differentiation, and presented the detailed data concerning the experimental design, the RNA-Seq quality data, the raw data obtained and the RT-qPCR validation data. This information is important to confirm the accuracy of the data considering a future reuse of the data provided. Moreover, this study may be used as groundwork for future characterization of the transcriptome and the translatome regulation of different cell types.
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spelling pubmed-69701452020-01-27 Data describing the experimental design and quality control of RNA-Seq of human adipose-derived stem cells undergoing early adipogenesis and osteogenesis Marcon, Bruna H. Spangenberg, Lucia Bonilauri, Bernardo Robert, Anny Waloski Angulski, Addeli Bez Batti Cabo, Guillermo Cabrera Cofré, Axel R. Bettes, Paulo Sergio Loiacono Dallagiovanna, Bruno Shigunov, Patrícia Data Brief Genetics, Genomics and Molecular Biology An important tool to study the regulation of gene expression is the sequencing and the analysis of different RNA fractions: total, ribosome-free, monosomal and polysomal. By comparing these different populations, it is possible to identity which genes are differentially expressed and to get information on how transcriptional and translational regulation modulates cellular function. Therefore, we used this strategy to analyze the regulation of gene expression of human adipose-derived stem cells during the triggering of the adipogenic and osteogenic differentiation. Here, we have focused on analyzing the differential expression of mRNAs during early adipogenic and osteogenic differentiation, and presented the detailed data concerning the experimental design, the RNA-Seq quality data, the raw data obtained and the RT-qPCR validation data. This information is important to confirm the accuracy of the data considering a future reuse of the data provided. Moreover, this study may be used as groundwork for future characterization of the transcriptome and the translatome regulation of different cell types. Elsevier 2019-12-31 /pmc/articles/PMC6970145/ /pubmed/31989002 http://dx.doi.org/10.1016/j.dib.2019.105053 Text en © 2019 The Author(s) http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Genetics, Genomics and Molecular Biology
Marcon, Bruna H.
Spangenberg, Lucia
Bonilauri, Bernardo
Robert, Anny Waloski
Angulski, Addeli Bez Batti
Cabo, Guillermo Cabrera
Cofré, Axel R.
Bettes, Paulo Sergio Loiacono
Dallagiovanna, Bruno
Shigunov, Patrícia
Data describing the experimental design and quality control of RNA-Seq of human adipose-derived stem cells undergoing early adipogenesis and osteogenesis
title Data describing the experimental design and quality control of RNA-Seq of human adipose-derived stem cells undergoing early adipogenesis and osteogenesis
title_full Data describing the experimental design and quality control of RNA-Seq of human adipose-derived stem cells undergoing early adipogenesis and osteogenesis
title_fullStr Data describing the experimental design and quality control of RNA-Seq of human adipose-derived stem cells undergoing early adipogenesis and osteogenesis
title_full_unstemmed Data describing the experimental design and quality control of RNA-Seq of human adipose-derived stem cells undergoing early adipogenesis and osteogenesis
title_short Data describing the experimental design and quality control of RNA-Seq of human adipose-derived stem cells undergoing early adipogenesis and osteogenesis
title_sort data describing the experimental design and quality control of rna-seq of human adipose-derived stem cells undergoing early adipogenesis and osteogenesis
topic Genetics, Genomics and Molecular Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6970145/
https://www.ncbi.nlm.nih.gov/pubmed/31989002
http://dx.doi.org/10.1016/j.dib.2019.105053
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